Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   301   1e-82
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   296   7e-81
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   158   2e-39
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       154   3e-38
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z73906-3|CAE45047.1|  470|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    28   3.5  
L07144-11|AAM54163.1|  144|Caenorhabditis elegans Hypothetical p...    28   3.5  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U70857-4|AAN84872.1|  405|Caenorhabditis elegans Na/ca exchanger...    27   8.1  
U70857-3|AAN84873.1|  950|Caenorhabditis elegans Na/ca exchanger...    27   8.1  
U70857-2|AAM29660.1|  975|Caenorhabditis elegans Na/ca exchanger...    27   8.1  
AJ001182-1|CAA04575.1|  236|Caenorhabditis elegans sodium-calciu...    27   8.1  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  301 bits (740), Expect = 1e-82
 Identities = 133/173 (76%), Positives = 153/173 (88%)
 Frame = +3

Query: 3    YRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEK 182
            YRETV  ES+Q+CLSKSPNKHNRL   AQPMPDGL +DI+ G VN RD+FK RA+ L EK
Sbjct: 573  YRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEK 632

Query: 183  YEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLR 362
            YEYDVTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV+++EN+R
Sbjct: 633  YEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMR 692

Query: 363  GVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQC 521
            GVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQC
Sbjct: 693  GVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQC 745


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  296 bits (726), Expect = 7e-81
 Identities = 131/173 (75%), Positives = 152/173 (87%)
 Frame = +3

Query: 3    YRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEK 182
            YRETV  ES+Q+CLSKSPNKHNRL   AQPMPDGL +DI+ G V+ RD+FK RA+Y  EK
Sbjct: 573  YRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEK 632

Query: 183  YEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLR 362
            YEY VTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQWA +EGV+++EN+R
Sbjct: 633  YEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMR 692

Query: 363  GVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQC 521
            GVRFN++DVTLH DAIHRGGGQIIPT RR  YA +LTA+PRL+EPVYL EIQC
Sbjct: 693  GVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQC 745


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  158 bits (384), Expect = 2e-39
 Identities = 74/175 (42%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
 Frame = +3

Query: 3    YRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEK 182
            + ETV E S   C +++PNK N++ M A+P+   L EDI+   V    + +    +   K
Sbjct: 666  FNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTK 725

Query: 183  YEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAE 350
            Y +D+  AR IW FGP+ TGPNIL+D +   +     L+ +++S+V GFQWA +EG + E
Sbjct: 726  YNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCE 785

Query: 351  ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 515
            E +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+
Sbjct: 786  EPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 840


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  154 bits (374), Expect = 3e-38
 Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 4/175 (2%)
 Frame = +3

Query: 3    YRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEK 182
            + ETV E S   C +++PNK N++ M A+P+   L EDI+   V    + +    +   K
Sbjct: 541  FNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTK 600

Query: 183  YEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAE 350
            Y +D+  AR IW FG + TGPNIL+D +   +     L+ +++S+V GFQWA +EG + E
Sbjct: 601  YNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATREGPLCE 660

Query: 351  ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 515
            E +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+  L A PRLMEP Y  E+
Sbjct: 661  EPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 715


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical
           protein K10C3.5a protein.
          Length = 894

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
 Frame = +3

Query: 210 KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGVMAEENL 359
           +IW FGPE    NIL +  +              +     ++VAGF+     G +  E +
Sbjct: 653 QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712

Query: 360 RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 515
            G+   +  ++V     AI   GGQ++   +    A       RL+  +Y C +
Sbjct: 713 HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTV 763


>Z73906-3|CAE45047.1|  470|Caenorhabditis elegans Hypothetical
           protein D2030.2b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 148 TSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSSG 324
           +S L   I+Q+ +N   P P    A +PR  APT  ++  KE S  ++   +L +  SG
Sbjct: 97  SSELRNSIMQQQSNNQPPSP----AQSPRNAAPTFRALPEKEQSVRLEKSNVLLVGPSG 151


>Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical
           protein D2030.2a protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 148 TSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSSG 324
           +S L   I+Q+ +N   P P    A +PR  APT  ++  KE S  ++   +L +  SG
Sbjct: 213 SSELRNSIMQQQSNNQPPSP----AQSPRNAAPTFRALPEKEQSVRLEKSNVLLVGPSG 267


>AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical
           protein Y62E10A.10 protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 120 DEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKD 299
           + GR  P+  F  R +YL  +    +++A++    GP    P+ + +  KG   +N I  
Sbjct: 61  ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKG-NMMNMIPM 119

Query: 300 SVVAGF 317
            VV G+
Sbjct: 120 IVVGGW 125


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 289 KLRTLLWLDSSGPLRKELWLKRICVVFDST 378
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 289 KLRTLLWLDSSGPLRKELWLKRICVVFDST 378
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299


>L07144-11|AAM54163.1|  144|Caenorhabditis elegans Hypothetical
           protein R05D3.12 protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +3

Query: 15  VAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYD 194
           VA   DQ+   +  +++ ++  K    P GL +  DE  VN  D+    +R    +  YD
Sbjct: 67  VAMREDQIIWLRD-SENRKMIAKEVTYPPGLLKIFDEILVNAADNKARDSRIYVLRQSYD 125

Query: 195 VTEARKIWCFG 227
            T +R   CFG
Sbjct: 126 -TLSRHDNCFG 135


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +3

Query: 78  MKAQPMPDGLPEDIDEGRVNP---RDDFKTRARYLTEKYEYDVTEARKI 215
           ++  P P   PE     R NP   RDD +       ++ E+ VTE R I
Sbjct: 87  IQIHPAPIAGPESTSSFRTNPEENRDDEEDNVEETDQEIEFPVTEERSI 135


>Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical
           protein F48C5.1 protein.
          Length = 264

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 379 MLNRTPRKFSSAITPSLAAHWNPATT 302
           M++  P +  S +TP + A+W P  T
Sbjct: 169 MISEPPVRVDSVVTPPVCAYWPPVVT 194


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 348 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 479
           + NL     +++  TLH   +HR     IP  R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346


>U64836-6|AAG24056.2|  201|Caenorhabditis elegans Hypothetical
           protein F10G2.1 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 39  CLSKSPNKHNRLFMKAQPMPDGLPEDIDE 125
           C  K  NK++  +    P PD + E+ DE
Sbjct: 116 CSEKLENKNSTCYQNWDPFPDAIDEETDE 144


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 212 LTGFGNIVFVLFCKIPSASLEVIAGIYATLINVLWQTIRHGLS 84
           + GF  +  ++F  I  ++   I GIY  L  +L+  + H +S
Sbjct: 129 VNGFNYVSAMIFIIIGGSTFMSITGIYIVLTVILYMAVAHHIS 171


>U70857-4|AAN84872.1|  405|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoformc protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 421 PPLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY*TPLEQSTRMLG 242
           PP+W A   +  S +  R  R+       S+A+    + TE+ ++     P E+STR   
Sbjct: 39  PPIW-AKKMNDLSRIQERFQRRMERKRGSSVASESKDSNTENALA-----PAEKSTRAAS 92

Query: 241 PVPSGPKHQILRASVTSYSYFSVRYRARV 155
                P     R+S T+  + + R+R R+
Sbjct: 93  VDLLQPSSDPRRSSQTNSPHLTSRFRNRL 121


>U70857-3|AAN84873.1|  950|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoformd protein.
          Length = 950

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 421 PPLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY*TPLEQSTRMLG 242
           PP+W A   +  S +  R  R+       S+A+    + TE+ ++     P E+STR   
Sbjct: 584 PPIW-AKKMNDLSRIQERFQRRMERKRGSSVASESKDSNTENALA-----PAEKSTRAAS 637

Query: 241 PVPSGPKHQILRASVTSYSYFSVRYRARV 155
                P     R+S T+  + + R+R R+
Sbjct: 638 VDLLQPSSDPRRSSQTNSPHLTSRFRNRL 666


>U70857-2|AAM29660.1|  975|Caenorhabditis elegans Na/ca exchangers
           protein 2, isoforma protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 421 PPLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY*TPLEQSTRMLG 242
           PP+W A   +  S +  R  R+       S+A+    + TE+ ++     P E+STR   
Sbjct: 584 PPIW-AKKMNDLSRIQERFQRRMERKRGSSVASESKDSNTENALA-----PAEKSTRAAS 637

Query: 241 PVPSGPKHQILRASVTSYSYFSVRYRARV 155
                P     R+S T+  + + R+R R+
Sbjct: 638 VDLLQPSSDPRRSSQTNSPHLTSRFRNRL 666


>AJ001182-1|CAA04575.1|  236|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 236

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -2

Query: 421 PPLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY*TPLEQSTRMLG 242
           PP+W A   +  S +  R  R+       S+A+    + TE+ ++     P E+STR   
Sbjct: 53  PPIW-AKKMNDLSRIQERFQRRMERKRGSSVASESKDSNTENALA-----PAEKSTRAAS 106

Query: 241 PVPSGPKHQILRASVTSYSYFSVRYRARV 155
                P     R+S T+  + + R+R R+
Sbjct: 107 VDLLQPSSDPRRSSQTNSPHLTSRFRNRL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,604
Number of Sequences: 27780
Number of extensions: 294245
Number of successful extensions: 914
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)