Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    28   0.067
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 225 GPEGTGPNILVDCSKGVQYLNEIKDSVVA 311
           GP   GP+ ++D + GV Y  +I  + +A
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNGIA 322


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 253 RMLGPVPSGPKHQILRASVTSYSYFSVRY 167
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 253 RMLGPVPSGPKHQILRASVTSYSYFSVRY 167
           R   P+P  P H +L A+V   S +  RY
Sbjct: 76  RFRKPLPIEPWHGVLNATVLPNSCYQERY 104


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 273 VQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 389
           ++  N  K +++ GF   A + +  E N +GV    Y+V
Sbjct: 524 IELANTFK-AIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 57  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 191
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 57  NKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEY 191
           N H  +F+    +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 558 NSHESVFV----VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 248 VGAGTLGAKAPNLTGFGNIVFV 183
           V AG +GA+ P+   +GN V V
Sbjct: 903 VTAGVIGARKPHYDIWGNTVNV 924


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  QPMPDGLPEDIDEGRVNPR 143
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 43  SQSRPTSTTVCS*RLSPCLMVCQRT 117
           +Q+ P +TT     + PC  +C+ T
Sbjct: 218 AQNGPFNTTTIFVPVKPCPWICELT 242


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  QPMPDGLPEDIDEGRVNPR 143
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,400
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)