Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.24 
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    29   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.73 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   0.73 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   0.73 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   3.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   5.2  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   6.8  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.0  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 319 NVQPLQPGVL-QHAQPGFNFHSVQPGVSFQPAQP 417
           N QP QPG   Q +QP  ++ S Q    FQP QP
Sbjct: 359 NNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQP 392



 Score = 29.5 bits (63), Expect = 0.32
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +1

Query: 289 QPGVQGQTDLNVQPLQPGV-LQHAQPGFNFHSVQPGVSFQPA---QPDHDGWNPVQTQPH 456
           QPG   Q    VQ  Q G   QH QP      VQ    +QP+   QP  +G      QP 
Sbjct: 364 QPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPV 423

Query: 457 DINQGQQPNA 486
              Q  QP++
Sbjct: 424 QSTQYYQPSS 433


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 304 GQTDLNVQPLQPGVLQHAQ-PGFNFHSV--QPGVSFQPAQPDHDGWNPVQTQPHDINQGQ 474
           G + L ++P    V +H + P +N  +    P   +  AQ     + P +  PH+ +Q Q
Sbjct: 457 GMSALPMRPRSQNVDKHRKFPYYNKRNAVTTPSSPYDGAQSGSPQFPPFELPPHNYSQAQ 516

Query: 475 QPNAQYP 495
            PN   P
Sbjct: 517 SPNLATP 523


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/74 (27%), Positives = 25/74 (33%)
 Frame = +1

Query: 286 QQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDIN 465
           QQP    +T +     Q   +Q   PG            QP  P   G  P+  Q   + 
Sbjct: 632 QQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGM- 690

Query: 466 QGQQPNAQYPQDGQ 507
           Q Q P  Q P   Q
Sbjct: 691 QPQMPGMQQPMAPQ 704


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 456 MRLGLDRIPTVVIWLSWLEAYSWLH 382
           M +G    P  + WLSW   YS++H
Sbjct: 449 MMIGCFMFPAGIFWLSWSGYYSYVH 473


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 456 MRLGLDRIPTVVIWLSWLEAYSWLH 382
           M +G    P  + WL+W   Y W+H
Sbjct: 389 MMIGCIVFPIGIFWLAWTGNYPWIH 413


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 95  STSLVNQKCISNQTNMTFTSSMPIPRYTFSKDSPQHIPDSRNST 226
           STS  +       T+ T TSS P+P  + S  +   IP + NST
Sbjct: 309 STSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 95  STSLVNQKCISNQTNMTFTSSMPIPRYTFSKDSPQHIPDSRNST 226
           STS  +       T+ T T+S P+P  + S  +   IP + NST
Sbjct: 255 STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST 298


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 456 MRLGLDRIPTVVIWLSWLEAYSWLH 382
           M +G    P  + WLSW   YS+++
Sbjct: 450 MMIGCFMFPAGIFWLSWSGHYSYVN 474


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 375 KIKTGLRVLQHTWLQWLHVQVS 310
           K  TG  + QH W QW+  + S
Sbjct: 434 KNMTGTNIAQHKWHQWVDREAS 455


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 456 MRLGLDRIPTVVIWLSWLEAYSWLH 382
           M +G    P  + WL+W   Y+++H
Sbjct: 453 MMIGSFLFPAGIFWLAWSGYYTYVH 477


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 7    IHLQPGHPDIHLQPNHPDIHLH 72
            I+ QPG+P     PN+P  ++H
Sbjct: 1644 INSQPGNPMFITDPNNPSPYVH 1665


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,629
Number of Sequences: 5004
Number of extensions: 39471
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)