Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330G07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 49 2e-06
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 49 2e-06
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 40 0.001
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 36 0.013
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 33 0.12
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 33 0.16
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 33 0.16
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 33 0.16
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 33 0.16
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 33 0.16
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 31 0.38
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical pr... 30 0.87
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 30 0.87
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 30 0.87
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 29 2.0
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 2.7
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical ... 28 3.5
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 3.5
AC006776-6|AAF60624.1| 356|Caenorhabditis elegans Serpentine re... 28 3.5
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 28 4.7
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 28 4.7
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 28 4.7
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 6.2
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 6.2
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 27 6.2
Z73102-16|CAA97417.1| 283|Caenorhabditis elegans Hypothetical p... 27 8.1
Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 27 8.1
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 27 8.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 8.1
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 27 8.1
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 27 8.1
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 8.1
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/163 (25%), Positives = 54/163 (33%), Gaps = 1/163 (0%)
Frame = +1
Query: 22 GHPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPEVHFXXXXXXX 201
GHP + HP + Q Q + H Q + Q H AH +
Sbjct: 71 GHPPVPQPQQHPLVQAQQAQAQAHAQAQAQAQAQVQAQAHQAQQAQAHAQAQAQAQAQAQ 130
Query: 202 XXXXXELHLQ-PGYTDVHLHHGQQDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFH 378
+ LQ + HL QQ QQ +Q +Q LQ Q AQ
Sbjct: 131 AQVQQQHQLQAQAHAQQHLQAAQQAQQAQQAQQLQASQQQALQQLQ--AQQQAQQQAQQQ 188
Query: 379 SVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQ 507
+ Q Q G P Q ++ QQP AQ PQ+ Q
Sbjct: 189 AQQQAQQQAQQQAQQQGGQP-QASQVAVSSAQQPQAQ-PQNSQ 229
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/163 (25%), Positives = 54/163 (33%), Gaps = 1/163 (0%)
Frame = +1
Query: 22 GHPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPEVHFXXXXXXX 201
GHP + HP + Q Q + H Q + Q H AH +
Sbjct: 71 GHPPVPQPQQHPLVQAQQAQAQAHAQAQAQAQAQVQAQAHQAQQAQAHAQAQAQAQAQAQ 130
Query: 202 XXXXXELHLQ-PGYTDVHLHHGQQDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFH 378
+ LQ + HL QQ QQ +Q +Q LQ Q AQ
Sbjct: 131 AQVQQQHQLQAQAHAQQHLQAAQQAQQAQQAQQLQASQQQALQQLQ--AQQQAQQQAQQQ 188
Query: 379 SVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQ 507
+ Q Q G P Q ++ QQP AQ PQ+ Q
Sbjct: 189 AQQQAQQQAQQQAQQQGGQP-QASQVAVSSAQQPQAQ-PQNSQ 229
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/68 (39%), Positives = 31/68 (45%)
Frame = +1
Query: 283 QQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDI 462
Q PG G L+ QP PG Q QPG PGV+ QP P DG NP Q P +
Sbjct: 154 QGPPGPAGDAGLDGQPGGPG--QDGQPGQPGPKGPPGVNGQPGAPGQDG-NPGQDAPSEP 210
Query: 463 NQGQQPNA 486
+P A
Sbjct: 211 LVPGEPGA 218
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 36.3 bits (80), Expect = 0.013
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Frame = +1
Query: 10 HLQPGHPDIHLQPNH-PDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPEVH--F 180
H P H H + +H P H H G+ H G H P H H +H H H
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGS---HHSPAHHGHHGEHHHAPAHHGH 518
Query: 181 XXXXXXXXXXXXELHLQPGYTDVHLHHGQQDVH 279
E H P + H HHG+ H
Sbjct: 519 HGEHGTHHGHHGEHHHAPAH---HGHHGEHGTH 548
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/90 (26%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Frame = +1
Query: 25 HPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPEVHF----XXXX 192
H + H P H H H G+ H G H P H H +H H H
Sbjct: 529 HGEHHHAPAH---HGHHGEHGTHHGHHGS---HHSPAHHGHHGEHHHAPAHHGHHGHHGS 582
Query: 193 XXXXXXXXELHLQPGYTDVHL-HHGQQDVH 279
E H + H HHG+ VH
Sbjct: 583 HGVHHGHHESHGHGHHAPAHHGHHGEHGVH 612
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 33.1 bits (72), Expect = 0.12
Identities = 27/69 (39%), Positives = 30/69 (43%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQ 468
QP Q Q VQ +QP LQ QP + QP V QP QP H P Q P + Q
Sbjct: 410 QPQPQQQPPQMVQ-VQPN-LQGQQPNMQMWAGQPLVQ-QPQQPHHIHQQPAQLHPVQLPQ 466
Query: 469 GQQPNAQYP 495
P YP
Sbjct: 467 VMAPPG-YP 474
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQG 471
PG+ G+ P PG Q PGF + G Q P DG V Q D+ Q
Sbjct: 1083 PGIPGKAGRQGAPGSPG--QDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQS 1140
Query: 472 QQP 480
QP
Sbjct: 1141 GQP 1143
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQG 471
PG+ G+ P PG Q PGF + G Q P DG V Q D+ Q
Sbjct: 1082 PGIPGKAGRQGAPGSPG--QDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQS 1139
Query: 472 QQP 480
QP
Sbjct: 1140 GQP 1142
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQG 471
PG+ G+ P PG Q PGF + G Q P DG V Q D+ Q
Sbjct: 1082 PGIPGKAGRQGAPGSPG--QDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQS 1139
Query: 472 QQP 480
QP
Sbjct: 1140 GQP 1142
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQG 471
PG+ G+ P PG Q PGF + G Q P DG V Q D+ Q
Sbjct: 1083 PGIPGKAGRQGAPGSPG--QDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQS 1140
Query: 472 QQP 480
QP
Sbjct: 1141 GQP 1143
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 32.7 bits (71), Expect = 0.16
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQG 471
PG+ G+ P PG Q PGF + G Q P DG V Q D+ Q
Sbjct: 1119 PGIPGKAGRQGAPGSPG--QDGLPGFPGMKGESGYPGQDGLPGRDGLPGVPGQKGDLGQS 1176
Query: 472 QQP 480
QP
Sbjct: 1177 GQP 1179
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 310 TDLNVQPLQPGVLQHAQPGFNFHSVQP-GVSFQPAQPDHDGWNPVQTQPHDINQGQQPNA 486
+++ +P+ P + + G + + P G S P Q QP QQP
Sbjct: 115 SNMRRRPVDPSISGNVGYGTSSQTSNPYGASASPYGAPQQNPQQYQEQPQSYQTYQQPQQ 174
Query: 487 QYPQDGQXQ 513
Q PQ GQ Q
Sbjct: 175 QQPQYGQQQ 183
>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
protein B0379.3b protein.
Length = 1050
Score = 30.7 bits (66), Expect = 0.66
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +1
Query: 325 QPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDG 504
QP+Q V Q++ PG + QP ++QP P P Q P I+ QQP Q P G
Sbjct: 713 QPMQTAVYQNSHPGAPYIPQQP--TYQPQLPVQQP-QPHQYAPQPIHH-QQPIHQ-PMHG 767
Query: 505 Q 507
Q
Sbjct: 768 Q 768
>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
protein B0379.3a protein.
Length = 1054
Score = 30.7 bits (66), Expect = 0.66
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +1
Query: 325 QPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDG 504
QP+Q V Q++ PG + QP ++QP P P Q P I+ QQP Q P G
Sbjct: 717 QPMQTAVYQNSHPGAPYIPQQP--TYQPQLPVQQP-QPHQYAPQPIHH-QQPIHQ-PMHG 771
Query: 505 Q 507
Q
Sbjct: 772 Q 772
>Z81104-3|CAD89749.1| 660|Caenorhabditis elegans Hypothetical
protein M199.5 protein.
Length = 660
Score = 30.3 bits (65), Expect = 0.87
Identities = 25/69 (36%), Positives = 28/69 (40%)
Frame = +1
Query: 301 QGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQQP 480
QG+ + QP Q G Q QPG + G QP Q G QP Q QP
Sbjct: 572 QGEKGQDGQPGQKG--QDGQPGQKGDKGEKGDIGQPGQKGDKGDKGQDGQPGQKGQDGQP 629
Query: 481 NAQYPQDGQ 507
Q QDGQ
Sbjct: 630 -GQKGQDGQ 637
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 30.3 bits (65), Expect = 0.87
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +1
Query: 4 HIHLQPGHPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQH 159
H+H GH +H D H H G H G E H++ H H H
Sbjct: 36 HVHTDGGHHGHMDTHHHHDSHHHGGHHGGHH--GGHYESHYESHHHHGHHGH 85
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +1
Query: 328 PLQPGVLQHAQPGFNFHSV----QPGVSFQPAQPDHDGWNPVQTQPHDIN--QGQQPNAQ 489
P+Q G Q QPG F+ + QPG + + P G+ +P D+ QQP Q
Sbjct: 643 PVQQGYQQMPQPGMGFNGMPATSQPGFNME-GSPAQMGYIQTANKPLDMEMPMQQQPPQQ 701
Query: 490 YPQ 498
PQ
Sbjct: 702 PPQ 704
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 29.1 bits (62), Expect = 2.0
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Frame = +1
Query: 229 QPGYTDVHLHHGQQDVHFQQQPGVQG--QTDLNVQPLQPGVLQHAQPGFNFHSVQ-PGVS 399
QPG + QQ H Q G Q Q N + Q+ Q G S PG
Sbjct: 2756 QPGQQGNQPPNYQQPSHQSMQQGHQAGYQQTSNQMQMNMQQQQNRQQGGPQQSFSGPGGI 2815
Query: 400 FQPAQPDHDGWNPVQTQPHDINQGQQPN 483
QP+QP + G+N Q QQ N
Sbjct: 2816 NQPSQPGYSGYNQQGGQGQQGQMQQQRN 2843
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/82 (29%), Positives = 26/82 (31%)
Frame = +1
Query: 268 QDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQT 447
Q QQQP QGQ + P Q F V+ G G QT
Sbjct: 3394 QAAQMQQQPTAQGQQNRMGMPSQQQSGAAYSNQMQFQGVRQGQQGMGGM-GGSGQQQPQT 3452
Query: 448 QPHDINQGQQPNAQYPQDGQXQ 513
QPH NQ Q Q Q
Sbjct: 3453 QPHGSNQYYQQQQDQRMQQQPQ 3474
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQP---AQPDHDG 429
PG G QP Q G Q QPG + PG QP QP +DG
Sbjct: 246 PGPAGPAGAPGQPGQAGHAQPGQPGPQGDAGAPGAPGQPGSAGQPGNDG 294
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = +1
Query: 85 EVHFNIAGQPEVHFQPDQHDIHFQHAHPEVHFXXXXXXXXXXXXEL-HLQPGYTDVHLHH 261
+V FN P + P Q+ + Q H +H ++ H+Q + HH
Sbjct: 999 QVQFNGRPLPPMQLPPLQNPHNQQQQHQMLHQSQMNYQQVQQVQQVQHVQQQQNLQNQHH 1058
Query: 262 GQQDVHFQQQ---PGVQGQTDLNVQPLQPGVLQHAQP 363
QQ H Q Q PG + ++ NV ++ + P
Sbjct: 1059 HQQQHHQQNQQQAPGNRSRSHSNVGKMEQEAQRQGSP 1095
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 28.3 bits (60), Expect = 3.5
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Frame = +1
Query: 238 YTDVHLHHGQQDVHFQQQPGVQGQTDLNV----QPLQPGVLQHAQPGFNFHSVQPGVSFQ 405
YTD L +++ +Q G V Q Q V Q Q H Q Q
Sbjct: 356 YTDEELQQFEREYAQKQGWGEHAYDPQQVASEQQHPQEAVQQPPQAQQQVHPAQ-----Q 410
Query: 406 PAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQXQ 513
P QP + PVQ + Q QQP Q PQ Q
Sbjct: 411 PIQPVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQ 446
>AL132951-7|CAD89753.2| 608|Caenorhabditis elegans Hypothetical
protein Y67H2A.10 protein.
Length = 608
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/56 (23%), Positives = 20/56 (35%)
Frame = +1
Query: 4 HIHLQPGHPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPE 171
H Q H P P + QQ++H + H+Q Q +Q H +
Sbjct: 463 HPQQQQQQQQYHQMPPQPQHSPYPQQQQMHHQMVQHSPHHYQQQQQQQQYQQQHQQ 518
Score = 27.9 bits (59), Expect = 4.7
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 2/143 (1%)
Frame = +1
Query: 73 QGQQEVHFNIAGQPEVHFQPDQHDIHFQHAHPEVHFXXXXXXXXXXXXELHLQPGYTDVH 252
Q QQ+ + + QP+ P Q +H Q H + P +
Sbjct: 467 QQQQQQYHQMPPQPQHSPYPQQQQMHHQMVQHSPHHYQQQQQQQQYQQQHQQSPQFPSY- 525
Query: 253 LHHGQQDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVS--FQPAQPDHD 426
QQ QQ P Q Q L P Q + + P S Q + P+
Sbjct: 526 ----QQSPQQQQAPPPQRSPIPLSQSLPPLNSMTQQQRASMQQMPPPNSGPLQYSPPNQQ 581
Query: 427 GWNPVQTQPHDINQGQQPNAQYP 495
G+ + + P + +Q P+ Q P
Sbjct: 582 GFGSMMSSPPNNSQQMTPSQQPP 604
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Frame = +1
Query: 22 GHPDIHLQPNHPDIHLHQGQQEVHF----NIAGQPEVHFQPDQHDIHFQHA------HPE 171
G+P Q HP +Q QQ+ H N++G P+ QP H Q A HP+
Sbjct: 486 GNPYAQQQQQHPMYAQYQQQQQQHAQHQQNMSGYPQQQQQPQHPHQHQQPASVPMQHHPQ 545
Query: 172 VH 177
H
Sbjct: 546 QH 547
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 4 HIHLQPGHPDIHLQPNHPDIHLHQGQQEVHFNIAGQPEVHFQPDQH 141
H G+P QP HP HQ QQ + P+ H P QH
Sbjct: 512 HQQNMSGYPQQQQQPQHP----HQHQQPASVPMQHHPQQH--PSQH 551
>AC006776-6|AAF60624.1| 356|Caenorhabditis elegans Serpentine
receptor, class w protein99 protein.
Length = 356
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 177 VYLGMGMLEVNVMLVWLEMHFWLTSDVEMYFLLTLMQMNIWMIWLQMNVW 28
+ +G+ ++ M + HF + DVE LT +W I+L MNVW
Sbjct: 56 ILIGIAFSDICAMSATVYKHFEMV-DVENPECLT--SNKLWKIYLNMNVW 102
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 403 QPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQXQ 513
QP QP + PVQ + Q QQP Q PQ Q
Sbjct: 396 QPIQPVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQ 432
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDG 429
QPG G + QP QPG + PG + QPG +P DG
Sbjct: 205 QPGQDGHPGQDGQPGQPGESREV-PGAPGPAGQPGSQGEPGPSGPDG 250
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 27.9 bits (59), Expect = 4.7
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +1
Query: 307 QTDLNVQPLQPGV----LQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDINQGQ 474
Q D N Q Q G Q+AQ N H+ Q + Q A P+ + VQ + N
Sbjct: 580 QNDPNAQNAQNGKNDPNAQNAQSDPNAHNAQ---NVQNA-PNVQNASNVQNSQNGQNDKN 635
Query: 475 QPNAQYPQDGQ 507
PNAQ Q+GQ
Sbjct: 636 DPNAQNSQNGQ 646
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 403 QPAQPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQXQ 513
QP QP + PVQ + Q QQP Q PQ Q
Sbjct: 399 QPIQPVNANPPPVQNAQPPVQQQQQPPQQPPQQPPQQ 435
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVL-QHAQPGFNFHSVQPGVSFQPAQPDHDG 429
QPG GQ + P PG + QPGF PG P QP DG
Sbjct: 185 QPGTPGQRGNDGFPGAPGAPGDNGQPGF------PGQDGAPGQPGADG 226
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVL-QHAQPGFNFHSVQPGVSFQPAQPDHDG 429
QPG GQ + P PG + QPGF PG P QP DG
Sbjct: 169 QPGTPGQRGNDGFPGAPGAPGDNGQPGF------PGQDGAPGQPGADG 210
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +2
Query: 80 NKKYISTSLVNQKCISNQTNMTFTSSMPIPRYTFSKDSPQHIPDSRNSTCS 232
N K ++ +++ + C+ + T+ + ++++ Y F + S +IP S S+ S
Sbjct: 305 NCKSVNYNVLTRSCLLSSTSKSISATVSDENYDFYERSCPYIPTSPTSSSS 355
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDI 462
PG G+ + P PG QPGF + +PG QP G QP D+
Sbjct: 733 PGYPGEHGTDGLPGLPGA--DGQPGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDV 787
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 229 QPGYTDVHLHHGQQDVHFQQ-QPGVQGQTDLNVQPLQPGVL-QHAQPGFNFHSVQPGVSF 402
+ GY + +G + Q QPG++G+ L+ QP PG Q PG + PG +
Sbjct: 905 EKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGENG 964
Query: 403 QPAQPDHDG 429
DG
Sbjct: 965 DNGNQGRDG 973
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDI 462
PG G+ + P PG QPGF + +PG QP G QP D+
Sbjct: 990 PGYPGEHGTDGLPGLPGA--DGQPGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDV 1044
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 229 QPGYTDVHLHHGQQDVHFQQ-QPGVQGQTDLNVQPLQPGVL-QHAQPGFNFHSVQPGVSF 402
+ GY + +G + Q QPG++G+ L+ QP PG Q PG + PG +
Sbjct: 1162 EKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGENG 1221
Query: 403 QPAQPDHDG 429
DG
Sbjct: 1222 DNGNQGRDG 1230
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDI 462
PG G+ + P PG QPGF + +PG QP G QP D+
Sbjct: 989 PGYPGEHGTDGLPGLPGA--DGQPGFVGEAGEPGTPGYRGQPGEPGNLAYPGQPGDV 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 229 QPGYTDVHLHHGQQDVHFQQ-QPGVQGQTDLNVQPLQPGVL-QHAQPGFNFHSVQPGVSF 402
+ GY + +G + Q QPG++G+ L+ QP PG Q PG + PG +
Sbjct: 1161 EKGYPGIPGENGLPGLRGQDGQPGLKGENGLDGQPGYPGSAGQLGTPGDVGYPGAPGENG 1220
Query: 403 QPAQPDHDG 429
DG
Sbjct: 1221 DNGNQGRDG 1229
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Frame = +1
Query: 277 HFQQQPGV--QGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQ 450
+ QQ P + QG + N QP P + Q N + PG S P P Q Q
Sbjct: 79 YVQQAPPLPTQGYSAYNQQP--PPLPQQPYQT-NMYPSNPGYSSTPGYP--------QQQ 127
Query: 451 PHDINQGQQPNAQYPQDGQXQF 516
P+ I G P YP Q+
Sbjct: 128 PYQIGTGATPAGMYPPPPTGQY 149
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 292 PGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQ 414
PG QG+ + +P QPG + QPG H QPG +P +
Sbjct: 234 PGGQGEKGASGEPGQPG--RDGQPG---HPGQPGKDGRPGE 269
>Z73102-16|CAA97417.1| 283|Caenorhabditis elegans Hypothetical
protein B0035.15 protein.
Length = 283
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 101 SLVNQKCISNQTNMTFTSSMPIPRYTFSKDSP 196
++ N+ + N M S+ P+ R+T +KD P
Sbjct: 57 AMKNESLVENMNKMYIKSTDPVERWTSTKDLP 88
>Z69791-3|CAA93662.1| 924|Caenorhabditis elegans Hypothetical
protein F39D8.1c protein.
Length = 924
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 GYTDVHLHHGQ-QDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPA 411
GY D + GQ Q+++ G Q Q Q Q G V +QP
Sbjct: 272 GYVDQNQFQGQDQNINAGGYVGNQNQNPGQFQDQNQNNYQGQYQGSTLAPSAGEVDYQPF 331
Query: 412 QPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQ 507
P + Q D QGQQ Q Q+ Q
Sbjct: 332 TPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 363
>Z69791-2|CAA93661.2| 919|Caenorhabditis elegans Hypothetical
protein F39D8.1b protein.
Length = 919
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 GYTDVHLHHGQ-QDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPA 411
GY D + GQ Q+++ G Q Q Q Q G V +QP
Sbjct: 267 GYVDQNQFQGQDQNINAGGYVGNQNQNPGQFQDQNQNNYQGQYQGSTLAPSAGEVDYQPF 326
Query: 412 QPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQ 507
P + Q D QGQQ Q Q+ Q
Sbjct: 327 TPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 358
>Z69791-1|CAA93660.1| 945|Caenorhabditis elegans Hypothetical
protein F39D8.1a protein.
Length = 945
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 1/92 (1%)
Frame = +1
Query: 235 GYTDVHLHHGQ-QDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPA 411
GY D + GQ Q+++ G Q Q Q Q G V +QP
Sbjct: 290 GYVDQNQFQGQDQNINAGGYVGNQNQNPGQFQDQNQNNYQGQYQGSTLAPSAGEVDYQPF 349
Query: 412 QPDHDGWNPVQTQPHDINQGQQPNAQYPQDGQ 507
P + Q D QGQQ Q Q+ Q
Sbjct: 350 TPSGNTDYNNNAQGFDQQQGQQGQYQQNQNDQ 381
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/72 (26%), Positives = 26/72 (36%)
Frame = +1
Query: 283 QQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPVQTQPHDI 462
QQ G +L++Q + Q Q Q QP Q G + +Q Q +
Sbjct: 278 QQPQSFSGTHELHLQRQREQQQQQQQQQQQQQQRQQNPQQQPQQTTQFGQSQIQLQSGPV 337
Query: 463 NQGQQPNAQYPQ 498
Q P Q PQ
Sbjct: 338 PPQQHPQQQQPQ 349
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 271 DVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDG 429
D+ Q PG GQ L P + G+ QPG PG +P + G
Sbjct: 180 DIGDQGTPGQDGQPGLAGPPGRDGLTGKGQPGVAGRPGMPGPRGEPGNNGNPG 232
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVLQHAQP-GFNFHSVQPGVSFQPAQPDHDGWNPVQTQP 453
+PGV Q++ + P +PG A P G QPG P QP G N QP
Sbjct: 203 EPGVPAQSEPLI-PGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQP 257
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 27.1 bits (57), Expect = 8.1
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 250 HLHHGQQDVHFQQQPGVQGQTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDG 429
H ++ QQ +Q QP VQ Q N Q Q V QH H Q ++ ++ G
Sbjct: 1165 HQYNSQQQPEYQHQPLVQMQEQSNEQ--QSQVFQHQHQ----HQAQQELA------ENQG 1212
Query: 430 WNPVQTQPHDINQGQ-QPNAQYPQDGQXQ 513
+ TQ Q Q Q Q P Q Q
Sbjct: 1213 SMGMATQQQQCRQSQLQQQLQQPPQQQMQ 1241
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 PHIHLQPGHPDIHLQPNHPDIHLHQGQQEVHFNIA--GQPEVHFQPDQH 141
PH H Q H HL H +H H+G + H GQ H Q +H
Sbjct: 770 PH-HQQMPHHQPHLHHAHHPVHPHRGPRASHSQHLQHGQYAHHTQRPRH 817
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 27.1 bits (57), Expect = 8.1
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Frame = +1
Query: 265 QQDVHFQQQPGVQG-QTDLNVQPLQPGVLQHAQPGFNFHSVQPGVSFQPAQPDHDGWNPV 441
QQ V +QQQ Q Q QP P + P ++Q Q NPV
Sbjct: 94 QQPVQYQQQQPQQPLQYQQQPQPAPPPIYSQTVV-IPQAPPPPPEAYQQQQYGPSQQNPV 152
Query: 442 QTQPHDI---NQGQQPNAQYP 495
QP DI +Q QP Q P
Sbjct: 153 MVQPADIPRYHQKPQPVPQVP 173
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 289 QPGVQGQTDLNVQPLQPGVLQHAQP-GFNFHSVQPGVSFQPAQPDHDGWNPVQTQP 453
+PGV Q++ + P +PG A P G QPG P QP G N QP
Sbjct: 203 EPGVPAQSEPLI-PGEPGPPGEAGPQGPPGSPGQPGADGSPGQPGPKGPNGPDGQP 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,460
Number of Sequences: 27780
Number of extensions: 247963
Number of successful extensions: 1101
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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