Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330G05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 26 3.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 3.0
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 25 5.2
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 5.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 5.2
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 5.2
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 6.8
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 9.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.0
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 262 DVTAHWLQKRIPAVALLAAEAIQHNVYA 179
++ WLQ+ +P L+AAEA ++ A
Sbjct: 237 NIIVSWLQENLPVPTLVAAEAFGQDLIA 264
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 80 SKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCL 205
S+H L NN+ +H+LER SE K+ + +D LD L
Sbjct: 1381 SQHRRLNLVNNHKEHVLERA---MSENNKMDNEAMDGFLDKL 1419
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 329 WQVDKVSPIKLFDENKSLAGLNLRHLLFQHGRGDTV 436
W V + P++LF N+ L HL+F +G D V
Sbjct: 166 WDVSRKPPLQLFTINQHSEDSVLTHLVF-NGNSDDV 200
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 329 WQVDKVSPIKLFDENKSLAGLNL 397
W V P+K+FD + SL G +
Sbjct: 130 WTVSGSDPVKMFDRHSSLNGTQI 152
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = -2
Query: 439 PHRVPAPVLEQQVPQVQSSQALVLVEQLDRRHLVHLPPR-----TGSAEEALCLAGHDVR 275
P PAP ++ P+V+ ++ L+ LD + H+ + +E AG +V
Sbjct: 648 PWNDPAPRKKKNAPEVEDTRPLLRAIILDFSAVNHIDTTGVQALVDTRKELEIYAGDEVE 707
Query: 274 *SIEDVTAHWLQKRIPA 224
D+ W+++ + A
Sbjct: 708 FHFTDINNDWIKRTLVA 724
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 56 TVFGVCSKSKHEALKTNNNNIDHLLER 136
TV + SKS+HE + N+ + +LL R
Sbjct: 543 TVESILSKSRHEEYRIANHIVAYLLSR 569
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 77 KSKHEALKTNNNNIDHL 127
K+ EAL++ NNIDHL
Sbjct: 1038 KTLREALQSKTNNIDHL 1054
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 406 QVPQVQSSQALVLVEQLDRRHLVHLP 329
Q+PQ++ S A E L +RH LP
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLP 66
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 176 DGVDIVLDCLCGEECNRGYSLL 241
+GV + DCL G E GYS +
Sbjct: 211 EGVSFLYDCLLGMEGKCGYSAI 232
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 281 IVTGETKSFFSAARAWWQVDKVSPIKLFDE-NKSLAGLNL 397
IV + + ++ + WWQ+ ++ + L + K L+G ++
Sbjct: 198 IVRTDAAAIWATGQTWWQIPPIARVNLVGQLPKGLSGKDI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,001
Number of Sequences: 5004
Number of extensions: 43314
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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