Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330G05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 30 0.87
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ... 29 1.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.0
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 2.7
U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 28 4.7
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 6.2
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of p... 27 8.1
AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of... 27 8.1
AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of... 27 8.1
AF101310-4|AAC69214.2| 662|Caenorhabditis elegans Hypothetical ... 27 8.1
AF016684-15|AAB66214.1| 543|Caenorhabditis elegans Hypothetical... 27 8.1
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 203 GNPAQCLRHPELPS*LRWCSRCPSRAGGRCYCCLS 99
GN C + E P+ WC + +GG CCLS
Sbjct: 698 GNAESCTKDEECPTSTHWCHKLGLASGG--MCCLS 730
>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
protein Y46E12BL.2 protein.
Length = 1334
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 259 VTAHWLQKRIPAVALLAAEAIQHNVYAIRSYLPDFAGVVAAPLEQVVDVIVVCLQRLV 86
VTA+W+Q A L A+ + +V LP F + A EQ+ V L R++
Sbjct: 386 VTAYWMQALAEAHVCLTAKDSKKSVQQAFQTLPLFVKIFEAGNEQLAQVTYQSLTRVI 443
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 53 VTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKV-TPDGVDIVLDCLCGEECNRG 229
+T + + ++L + +++D L+ + YT V + DG V+ G G
Sbjct: 1364 ITKLANVNMTSAQSLNSVLSSLDLALKGSTVYTLGVSSTKSKDGTYAVI---FGYVIASG 1420
Query: 230 YSLLKPMGRYILYGSSNIVTGETKSFF 310
Y+L+ P +YGS+ +TG+T++ +
Sbjct: 1421 YTLVSPRCTLSIYGSTIYLTGDTRASY 1447
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 53 VTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKV-TPDGVDIVLDCLCGEECNRG 229
+T + + ++L + +++D L+ + YT V + DG V+ G G
Sbjct: 1364 ITKLANVNMTSAQSLNSVLSSLDLALKGSTVYTLGVSSTKSKDGTYAVI---FGYVIASG 1420
Query: 230 YSLLKPMGRYILYGSSNIVTGETKSFF 310
Y+L+ P +YGS+ +TG+T++ +
Sbjct: 1421 YTLVSPRCTLSIYGSTIYLTGDTRASY 1447
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 95 LKTNNNNIDHLLERGSDYTSEVRKVT 172
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1260 LQAANDRIDHLTKTVNDHTSKVRDLT 1285
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 95 LKTNNNNIDHLLERGSDYTSEVRKVT 172
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 95 LKTNNNNIDHLLERGSDYTSEVRKVT 172
L+ N+ IDHL + +D+TS+VR +T
Sbjct: 1333 LQAANDRIDHLTKTVNDHTSKVRDLT 1358
>U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical
protein M02D8.5 protein.
Length = 669
Score = 28.3 bits (60), Expect = 3.5
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 224 RGYSLLKPMGRYILYGSSNIVTGETKSFFSAARAWWQVDKVSPIKLFDENKSLAGLNLRH 403
RGYSL +Y S + + F++A ++W VSP+ + +KSL L
Sbjct: 341 RGYSLNNETDSLTVYDSYQHIVVQMMPFYAAFTSFWAT--VSPVNVQFISKSLTAFPLD- 397
Query: 404 LLFQHGRGDTV 436
Q GRG +V
Sbjct: 398 ---QIGRGFSV 405
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 LDCLCGEE-CNRGYSLLKPMGRYILYGSSNIVTGETK 301
L C+C E CNR ++ P+G I Y S + TK
Sbjct: 376 LQCICDTEFCNREQNIEVPLGNVICYLSKRDQSERTK 412
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 469 PQSEDAVHGAPHRVPAPVLEQQVPQVQSSQALVLVEQLDRRHLVHLPPR 323
P ++ A P + A + QQ P VQ + + + + ++ +V PP+
Sbjct: 201 PVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPK 249
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = -2
Query: 271 SIEDVTAHWLQKRIPAVALLAAEAIQHNVYAIRSYLPDFAGVVAAPLEQVVDVIVVCLQR 92
++ A +L A ++ E N Y ++YL D+ V P +Q++ + +
Sbjct: 276 TVTAANASYLTDGASAALIMTEEYALANGYKPKAYLRDYLYVAQDPKDQLLLSPAYVIPK 335
Query: 91 LVLAFGADTKHGDVFD 44
L+ G K DVF+
Sbjct: 336 LLDKAGLTLKDVDVFE 351
>Z81086-3|CAD56586.1| 711|Caenorhabditis elegans Hypothetical
protein F53B6.2b protein.
Length = 711
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 1 WRRCGTSCSPVGEDGRKRHRVWCLLQKQARGAEDKQ 108
W C SC + G +R +VWC + + +RG ++
Sbjct: 248 WTECSRSC----DSGERRRQVWCEI-RDSRGKTQRR 278
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 1 WRRCGTSCSPVGEDGRKRHRVWCLLQKQARGAEDKQ 108
W C SC + G +R +VWC + + +RG ++
Sbjct: 582 WTECSRSC----DSGERRRQVWCEI-RDSRGKTQRR 612
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 448 HGAPHRVPAPVLEQQVPQVQSSQALVLVEQLDRRHLVHLPPRTGSAEEAL 299
H PH P PV++ Q+ + SS VL +Q ++ P +T +A ++L
Sbjct: 256 HPTPHLAPLPVMQHQLNNL-SSLTQVLSQQTFNTTIL-TPQQTANAVQSL 303
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 448 HGAPHRVPAPVLEQQVPQVQSSQALVLVEQLDRRHLVHLPPRTGSAEEAL 299
H PH P PV++ Q+ + SS VL +Q ++ P +T +A ++L
Sbjct: 256 HPTPHLAPLPVMQHQLNNL-SSLTQVLSQQTFNTTIL-TPQQTANAVQSL 303
>U53180-4|AAA96286.2| 558|Caenorhabditis elegans Suppressor of
presenilin defectprotein 1 protein.
Length = 558
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 469 PQSEDAVHGAPHRVPAPVLEQQVPQVQSSQAL 374
P E + G +PA +E+ VP+V+ + L
Sbjct: 19 PSEESTIAGPETDIPAETIEENVPEVEENTLL 50
>AY160228-1|AAN62581.1| 558|Caenorhabditis elegans suppressor of
presenilin 1 protein.
Length = 558
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 469 PQSEDAVHGAPHRVPAPVLEQQVPQVQSSQAL 374
P E + G +PA +E+ VP+V+ + L
Sbjct: 19 PSEESTIAGPETDIPAETIEENVPEVEENTLL 50
>AF548624-1|AAN59932.1| 558|Caenorhabditis elegans suppressor of
presenilin defect protein.
Length = 558
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 469 PQSEDAVHGAPHRVPAPVLEQQVPQVQSSQAL 374
P E + G +PA +E+ VP+V+ + L
Sbjct: 19 PSEESTIAGPETDIPAETIEENVPEVEENTLL 50
>AF101310-4|AAC69214.2| 662|Caenorhabditis elegans Hypothetical
protein C39F7.5 protein.
Length = 662
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 493 DGLDLALRPQSEDAVHGAPHRVPAPVLEQQVPQVQSSQALVLVE 362
D LD +L P+SED++ + + A + P +Q ++AL L+E
Sbjct: 294 DRLDWSLAPKSEDSI-SSLSQAKAITNSGRTPDLQLARALQLIE 336
>AF016684-15|AAB66214.1| 543|Caenorhabditis elegans Hypothetical
protein F45C12.15 protein.
Length = 543
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 32 LAKTVENVTVFGVCSKSKHEALKTNNNNIDHLLERGSDYTSEVRKVTPDGVDIVLDCLCG 211
L TV+ V V + K++ E +K+ N L R E DGVD V C
Sbjct: 187 LRTTVQKVHV--LLYKTRAEVMKSYLNGERADLPRKMKAILEAEYDKSDGVDDVHIRECK 244
Query: 212 EECNRGYSLLK 244
++C YSL++
Sbjct: 245 DQCELSYSLIE 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,918
Number of Sequences: 27780
Number of extensions: 269860
Number of successful extensions: 1009
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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