Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 148  VVAAPLEQVVDVIVVCLQR 92
            VVAA L  +V VIV+C+ R
Sbjct: 1591 VVAAILVIIVAVIVICVLR 1609


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 122 GRCYCCLSSAP 90
           G CY C+S AP
Sbjct: 321 GDCYYCISGAP 331


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 430 VPAPVLEQQVPQVQSSQAL 374
           +P P   Q VPQ  +SQA+
Sbjct: 764 IPPPPSAQNVPQNTNSQAI 782


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 466 QSEDAVHGAPHRVPAPVLEQQVPQ 395
           QS+    GAP   P+P    Q PQ
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQ 35


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 251 PLASEANTRGCTPRRRGNPAQCLRHPELPS 162
           P   EA   G   R  G+PA     P+LP+
Sbjct: 430 PRELEAVNLGSACRIHGSPATTAAPPQLPT 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,042
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)