Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G04f
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141...    27   4.1  
10_02_0200 - 6672743-6673717,6676257-6676634,6677017-6677301,667...    26   9.4  
08_02_0227 - 14485676-14487316                                         26   9.4  

>03_01_0174 +
           1410322-1410345,1410458-1410760,1411914-1412034,
           1412147-1412321,1412417-1412487,1412586-1413268
          Length = 458

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 336 HAKCLNPTKXXXXXIVYFYNIVLSRLTHVNYGSYKVRCAICRTI 205
           HAK L  T+     ++Y  NI++S +T V+  S+ +    C  +
Sbjct: 167 HAKELTYTRGYLLELLYSNNIIISNVTFVDSPSWNLHPTYCTNV 210


>10_02_0200 -
           6672743-6673717,6676257-6676634,6677017-6677301,
           6677420-6677570,6677696-6677930,6678689-6678764
          Length = 699

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 279 NIVLSRLTHVNYGSYKVRCAICRTIRKETSNACYSPLFRKSIIIRLQMSPATAFSM 112
           +++L   TH +Y +YK+        R E  +   SP F  +I +R+Q     + +M
Sbjct: 278 SMLLKNKTH-HYVAYKINAQKLNIYRIEPCSGLISPQFTCNISVRMQAQQGVSPNM 332


>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 150 IRLQMSPATAFSMCNCYEICLRNYSL 73
           +RL     TAF+M NC+  C R++ L
Sbjct: 250 VRLHCPAVTAFAMVNCHMFC-RSFEL 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,937,031
Number of Sequences: 37544
Number of extensions: 145586
Number of successful extensions: 257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)