Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G04f
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic mul...    31   0.22 
AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical...    31   0.22 
Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and c...    27   4.8  
AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.      26   8.4  
AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.      26   8.4  
AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger f...    26   8.4  

>DQ150101-1|AAZ77787.1|  386|Caenorhabditis elegans synthetic
           multivulva protein LIN-8 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 131
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>AF025452-10|AAB70947.2|  386|Caenorhabditis elegans Hypothetical
           protein B0454.1 protein.
          Length = 386

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  DCKQYYSTNKYLIFTKISSYNF*DISHNSYTLKRQLL 131
           D  +Y+ST KY+  +K   + F D   N  TLK+ +L
Sbjct: 33  DPTRYFSTEKYIALSKDEKFKFDDYDVNDETLKKVVL 69


>Z19158-6|CAA79575.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 288 YFYNIVLSRLTHVNYGSYKVRCAICRTIRKETSNACYSP 172
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>Z19156-3|CAA79564.2|  615|Caenorhabditis elegans Hypothetical
           protein T23G5.5 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 288 YFYNIVLSRLTHVNYGSYKVRCAICRTIRKETSNACYSP 172
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>AF079899-1|AAC83661.1|  615|Caenorhabditis elegans sodium- and
           chloride-dependentantidepressant- and cocaine-sensitive
           dopamine transporterprotein.
          Length = 615

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 288 YFYNIVLSRLTHVNYGSYKVRCAICRTIRKETSNACYSP 172
           +FYN++L+   H  Y S+              S ACY P
Sbjct: 135 FFYNVILAWGLHYLYTSFSFNLPWASCNNSYNSPACYEP 173


>AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 249 NYGSYKVRCAIC 214
           NYGSY+ RC IC
Sbjct: 50  NYGSYQGRCVIC 61


>AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 249 NYGSYKVRCAIC 214
           NYGSY+ RC IC
Sbjct: 50  NYGSYQGRCVIC 61


>AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger
           family protein 5 protein.
          Length = 110

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 249 NYGSYKVRCAIC 214
           NYGSY+ RC IC
Sbjct: 50  NYGSYQGRCVIC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,402,405
Number of Sequences: 27780
Number of extensions: 153584
Number of successful extensions: 363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)