Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   1.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.7  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   1.7  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   5.2  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   6.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   9.0  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   9.0  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 299 YIYFCQLLVVYMKVCYFIFLNFEN 228
           Y Y   ++++ + +CYFI+ NF N
Sbjct: 4   YEYVLLVIILILSLCYFIYNNFLN 27


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 287  CQLLVVYMKVCYFIFLNFENHTILYII*FHNNANPSTTYIVCL 159
            CQLL++++ VC   F+N     + Y I  HN+   S + I  L
Sbjct: 3842 CQLLMLFLPVCE-QFINLAESVLDYFINVHNSNLDSLSKISTL 3883


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 191 ANPSTTYIVCLCKKKNTNIRVPFDV*--YCLLHDENVLQLFSLK 66
           ++PSTT+    C     +I+  F+V   YC+LH +N L+ F  K
Sbjct: 432 SHPSTTF----CSNVENDIKEIFEVCKDYCMLHVQNNLKAFEEK 471


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 361 LPYRFSLNNSFTIFSIKINLFTFIFVN 281
           +PY F+L++      I+ NL+T +F N
Sbjct: 73  VPYNFALHHEDETIEIQDNLYTSVFHN 99


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 143 TNIRVPFDV*YCLLHDENVLQLFSL 69
           T++R+  D   C+LHD N+ ++F +
Sbjct: 73  TDVRLTKDEVVCILHDRNLNRVFGV 97


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 221 ILYII*FHNNANPSTTYIVCLCKKKNTNIRVPFD 120
           I+ ++ +  N NP++T  +C+ KK    +   +D
Sbjct: 96  IISVLEYRRNKNPTSTAHICIDKKGKEAVSYSWD 129


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 111 ISHIKRNSDVSIFFFTQTHNVSS 179
           ++ IKRN  V++ FFT + N  S
Sbjct: 134 LTRIKRNYGVALLFFTSSKNDDS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,798
Number of Sequences: 5004
Number of extensions: 42008
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)