Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0783 + 25183361-25185628                                         28   4.0  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 27   9.1  

>01_05_0783 + 25183361-25185628
          Length = 755

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 370 SAYLPYRFSLN-NSFTIFSIKINLFTFIFVNYWW 272
           ++Y+P   ++N NS+ I  I  N F F +   WW
Sbjct: 656 TSYMPPATAVNYNSWLIIGIIFNFFVFRYRKLWW 689


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 477 FGNQMAYHIILKVKVIISDFYLGFGHITIKSSSPICPHIYRIDFH 343
           +G+    H++LKV++ I+ FY+      +  SS +C  +  +  H
Sbjct: 92  YGSLFHQHLLLKVQLQINMFYVSGQPFNLMHSSLVCQGVPDLSEH 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,503
Number of Sequences: 37544
Number of extensions: 202478
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)