Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.20 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.20 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 55  YILYLREKSCKTFSSCSKQYHTSNGTRMLVFFFLHRHTM 171
           Y  Y+RE      SS   QYH     R  +++FLH+  M
Sbjct: 233 YYYYMREMLPYWMSS--SQYHMPKEIRGQLYYFLHKQLM 269


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 55  YILYLREKSCKTFSSCSKQYHTSNGTRMLVFFFLHRHTM 171
           Y  Y+RE      SS   QYH     R  +++FLH+  M
Sbjct: 233 YYYYMREMLPYWMSS--SQYHMPKEIRGQLYYFLHKQLM 269


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 245 K*NNTPSYTPPVIDKNKCK 301
           K N T  Y PP I K+ CK
Sbjct: 131 KNNGTCLYVPPGIFKSTCK 149


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 409 FWTHHYKVQFAHLSAYLPYRFSLNNSFTIF 320
           FW HH++ ++ + S   PY    N ++T F
Sbjct: 429 FWEHHFQCRYPNASV-TPY----NKNYTKF 453


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 450 LCDRPFGYQSRSDVHLRTY 506
           LC   FG +   ++H++T+
Sbjct: 264 LCHETFGSKKTMELHIKTH 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,441
Number of Sequences: 438
Number of extensions: 2859
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)