Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F11f
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    34   0.013
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    27   1.2  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   2.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.5  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   3.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   4.7  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    25   6.2  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   6.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   8.2  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 33.9 bits (74), Expect = 0.013
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 228 DERVQRRAQLHQRHAPPPQQVLLLQNIVHSLVTNL-EYK 341
           DE V RR +LH+ + P   ++ L QNI+  L TN  EYK
Sbjct: 52  DEEVTRRKKLHEPNGPKFHELPLNQNILDGLSTNFAEYK 90


>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 254 LGSSLYAFVLDMSLDSMRNLSSFLRYASEASYIPS 150
           LG+++     +M    M N+S+F+ YA +  ++PS
Sbjct: 45  LGANIRYKESNMPFVQMENISAFINYAQQVVHVPS 79


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 186 KGGQVPHRVQRHIQDERVQRRAQLHQRHAPPPQQVLLLQNIVHSLVTN 329
           K G  PH     + +E    R+ L   +  P    LL  N+ H LV N
Sbjct: 622 KKGIFPHDFLDSMPEEASLIRSMLSSSNKRPTAAQLLTSNLFHDLVVN 669


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 230 VLDMSLDSMRNLSSFLRYASEASYIPSPGPTE-ILTCKFSLLTLSL 96
           V+++SLD++  L+SF  ++S+     S GP + +L C   ++  S+
Sbjct: 200 VMNISLDTISKLASFAYFSSKDKTPASFGPPKSLLQCMVDMVCDSI 245


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 318 VSVLYFAVTVLVEVGVRGADAAGLVVVR--VRPGYVSGLDEELVLLSQV 178
           +++   A+  +V VG+RG++A  + VV   + P  V+ LD+ L  L  V
Sbjct: 81  MTIWQLALQCVVNVGIRGSEAIRIRVVEAGIVPIVVTLLDDFLFALESV 129


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 141 DGDLDLQVLPVDLELGPELPHVAVRVLGLDEGEHP 37
           DG   +    V    G  + +V +R+LG+D G HP
Sbjct: 135 DGGWGIHTEGVSTVFGTSMNYVVLRILGMDAG-HP 168


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 395 WHGSAGPRGVSPVHTQILLTRLTKW 469
           W  SAGP+G   VH  +  T   KW
Sbjct: 109 WSKSAGPQGDKDVHFAV-ATMFVKW 132


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 141 DGDLDLQVLPVDLELGPELPHVAVRVLGLDEGEHPTV 31
           DG   + +L V+ +  P+  + A +V G ++  HP V
Sbjct: 104 DGQTVIAILTVEDKYTPDKANEAEKVFGANDRAHPAV 140


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 281 RWGCVALMQLGSSLYAFVLDMSLDSMRNLSSFLRYASEASYIP 153
           RW C  +  L + L+  + D ++ S+     FLR+ + A   P
Sbjct: 307 RWVCKLIRNLTNRLFPSISDSTICSLIGGFFFLRFVNPAIISP 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,342
Number of Sequences: 5004
Number of extensions: 34355
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)