Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F11f
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0723 + 31501900-31502808,31502846-31503295                       30   1.2  
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271...    27   6.2  
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    27   6.2  
07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615     27   8.2  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   8.2  

>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +1

Query: 37  RVLSFIEAKDADGYVGKFGAKLKVNRENLQVKISVGPGEGIYEASLAYLRKEDKFLIESR 216
           R L FI+A ++ GYVG      +   +++      G GE + +  +  LR++  F I+S 
Sbjct: 330 RKLCFIDAANSSGYVGLASMVFETTGDDM----CGGAGEWVRKGGIGQLRRQ--FKIKSA 383

Query: 217 DISRTNAYNDEPSC 258
           D S+   +  E SC
Sbjct: 384 DASKLRWF-CEKSC 396


>11_06_0713 +
           26524984-26525276,26526008-26526434,26526550-26527171,
           26528059-26528099,26528181-26528249,26528565-26528665,
           26529300-26529378,26529955-26530053,26530129-26530197,
           26530326-26530375,26530482-26530548,26531031-26531125,
           26534469-26534856
          Length = 799

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 285 VEVGVRGADAAGLVVVRVRPGYVSGLDEELVLLSQVRERGL 163
           ++V  RGA     VV+     YV  +DE LV + Q+ E GL
Sbjct: 719 LKVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGL 759


>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 177 VPEKGGQVPHRVQRHIQDER--VQRRAQLHQRHAPPPQQVLLLQN 305
           V E   Q P   Q+ +Q ++  +Q++ QLHQ+H   PQ  L  Q+
Sbjct: 644 VAEVPTQQPPMQQQQLQQQQNQLQQQNQLHQQHQLQPQNQLQQQH 688


>07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615
          Length = 368

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = -1

Query: 200 NLSSFLRYASEASYIPSPGPTEILTCKFSL--------LTLSLAPNFPT*PSASLASMKE 45
           +L+S L+ A+ A+Y P+    + L     L        L  ++ P   T  +A+ A+ ++
Sbjct: 134 DLTSLLKPAAAAAYYPTQADLDTLRALEPLAGYPDLLRLASAILPAATTTGAAAAAAAEQ 193

Query: 44  STLLLAWALSTQ 9
           + LLL W L  Q
Sbjct: 194 AQLLLPWLLQAQ 205


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 165 LVYPLAGTDGDLDLQVLPVDL 103
           +VYPL  T G LDL +L  DL
Sbjct: 441 MVYPLESTFGQLDLLLLATDL 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,934
Number of Sequences: 37544
Number of extensions: 245471
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)