Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330F11f
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical p... 60 1e-09
Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical pr... 32 0.20
AL117195-20|CAB60768.1| 388|Caenorhabditis elegans Hypothetical... 30 0.79
Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC024817-18|AAK68533.1| 342|Caenorhabditis elegans C-type lecti... 29 1.4
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 29 2.4
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 4.2
AF045642-6|AAC02590.1| 632|Caenorhabditis elegans Hypothetical ... 27 7.4
Z82083-4|CAB04972.1| 371|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 9.8
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 9.8
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z95559-13|CAB09003.2| 682|Caenorhabditis elegans Hypothetical
protein Y41E3.1a protein.
Length = 682
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/87 (32%), Positives = 44/87 (50%)
Frame = +1
Query: 40 VLSFIEAKDADGYVGKFGAKLKVNRENLQVKISVGPGEGIYEASLAYLRKEDKFLIESRD 219
+L++ KDADG+V K + Q+K+ PGE IYE +L Y D+ ++
Sbjct: 592 LLAYKNVKDADGFVPDLSGSTKAAFAHYQLKLQTTPGEAIYEVTLFYDIVRDEVKLDFGS 651
Query: 220 ISRTNAYNDEPSCISATHPHLNKYCYC 300
+S N + D P CI + +L +C C
Sbjct: 652 MSHVNKFGDTPHCIIDKNYYLATFCVC 678
>Z69794-4|CAA93678.3| 654|Caenorhabditis elegans Hypothetical
protein R03G8.3 protein.
Length = 654
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 85 KFGAKLKVNRENLQVKISVGPGEGIYEASLAYLRKEDKFLIESRDISRTNAYNDEPSCIS 264
+F K K + V P + +Y+A++ L + ++ + R+N Y CI
Sbjct: 575 QFDQKFKGSMLYTAVVEMTKPSKAVYKANVKILENGEVKVLGM--VERSNKYGSTAYCIG 632
Query: 265 ATHPHLNKYCYCK 303
+ H H YCYCK
Sbjct: 633 SEH-H-RPYCYCK 643
>AL117195-20|CAB60768.1| 388|Caenorhabditis elegans Hypothetical
protein Y57A10A.27 protein.
Length = 388
Score = 30.3 bits (65), Expect = 0.79
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +1
Query: 4 VHWVLRAHANSRVLSFIEAKDADGYVGKFGAKLKVNRENLQVKISVGPGEGIYEASLAYL 183
+H VL+A A SRVLSF ++ DG++ KLK N E ++ ++ G + E LA L
Sbjct: 193 LHVVLKAIATSRVLSF---RNEDGFLRMCIEKLKSNTEIVEHVLADG-ARVVSEFILAEL 248
Query: 184 RK 189
K
Sbjct: 249 LK 250
>Z98851-2|CAB11536.1| 324|Caenorhabditis elegans Hypothetical
protein H12I19.2 protein.
Length = 324
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 282 QQVLLLQNIVHSLVTNLEYKFER*DFLFIIILINSNSAGTAQRDRAGCRQYIPKYYSLDL 461
+ VL QNI+ V + F DF+F++ L NS G+ +R Y ++S++L
Sbjct: 140 ETVLSAQNILQRKVKYIYALFIVKDFIFLLCLEIGNSIGSKRRVELAKNCYAAIFFSINL 199
>AC024817-18|AAK68533.1| 342|Caenorhabditis elegans C-type lectin
protein 81 protein.
Length = 342
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 171 RGLVYPLAGTDGDLDLQVLPVD 106
RG+ +P+ GTD D+DL + VD
Sbjct: 232 RGIPFPIDGTDDDIDLDLKDVD 253
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 138 GDLDLQVLPVDLELGPELPHVAVRVLGLDEGEHPTV 31
G LD + + ELGP L +VL LD PTV
Sbjct: 300 GQLDAALQCISNELGPNLKDSMAKVLSLDVEVRPTV 335
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
protein F26A3.3 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 237 VQRRAQLHQRHAPPPQQVLLLQNIVHSLVTNLEYKFER*DFLFIIILINSNSAGTAQRDR 416
V+RR R+ P Q + N + +E++F++ DF+ + N A +D
Sbjct: 148 VRRRKSARTRNTEPTQADKIGMNQI-----KVEFEFDKIDFMTVHFKHFENDFEVADKDA 202
Query: 417 AGCRQYIPKYYSLDLQ 464
+Q + YY + ++
Sbjct: 203 KRTKQTVTMYYQITVR 218
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 237 VQRRAQLHQRHAPPPQQVLLLQNIVHSLVTNLEYKFER*DFLFIIILINSNSAGTAQRDR 416
V+RR R+ P Q + N + +E++F++ DF+ + N A +D
Sbjct: 148 VRRRKSARTRNTEPTQADKIGMNQI-----KVEFEFDKIDFMTVHFKHFENDFEVADKDA 202
Query: 417 AGCRQYIPKYYSLDLQ 464
+Q + YY + ++
Sbjct: 203 KRTKQTVTMYYQITVR 218
>AF045642-6|AAC02590.1| 632|Caenorhabditis elegans Hypothetical
protein C17H12.12 protein.
Length = 632
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 183 EKGGQVPHRVQRHIQDERVQRRAQLHQRHAPPPQQVL 293
E G QV + R DE +R+ + HQ+ P P+ +
Sbjct: 349 ETGNQVELKKFRDFFDEEYERKLKAHQQKPPVPKPAI 385
>Z82083-4|CAB04972.1| 371|Caenorhabditis elegans Hypothetical
protein ZK1010.6 protein.
Length = 371
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 198 LVLLSQVRERGLVYPLAGTDGDLDLQVLPVDL 103
L +LS+ ++RG++YP DG D + DL
Sbjct: 323 LSMLSKWKDRGMIYPYKKYDGTPDSNLPMTDL 354
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 225 GYVSGLDEELVLLSQVRE--RGLVYPLAGTDGDLDLQVLPVDLEL 97
GY +GL++ + + + +P+ GTD D+DL + VD L
Sbjct: 694 GYSAGLNDHQYYPTDDYNGIKSVPFPIDGTDDDIDLDLKDVDKSL 738
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical protein
K06A9.1a protein.
Length = 1032
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 225 GYVSGLDEELVLLSQVRE--RGLVYPLAGTDGDLDLQVLPVDLEL 97
GY +GL++ + + + +P+ GTD D+DL + VD L
Sbjct: 901 GYSAGLNDHQYYPTDDYNGIKSVPFPIDGTDDDIDLDLKDVDKSL 945
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 225 GYVSGLDEELVLLSQVRE--RGLVYPLAGTDGDLDLQVLPVDLEL 97
GY +GL++ + + + +P+ GTD D+DL + VD L
Sbjct: 2101 GYSAGLNDHQYYPTDDYNGIKSVPFPIDGTDDDIDLDLKDVDKSL 2145
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 254 LGSSLYAFVLDMSLDSMRNLSSFLRYASEASYIPS 150
+ L F+ D+S++ M S L+YA + +IPS
Sbjct: 898 ISDKLLHFIADLSIEKMETSQSVLKYAHD--FIPS 930
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,318
Number of Sequences: 27780
Number of extensions: 195040
Number of successful extensions: 626
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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