Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F11f
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.44 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.76 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 269 VALMQLGSSLYAFVLDMSLDSMRNLS 192
           + L+Q+  ++YAF++  + D+ RN+S
Sbjct: 91  ILLVQIAVAVYAFIVVKNDDNFRNIS 116


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 233  FVLDMSLDSMRNLSSFLRYASEASYIPSPGPTEIL 129
            +++D S  S    SSFL  +SE+S  P   PTE L
Sbjct: 948  YIVDES-SSSSFYSSFLYKSSESSCNPDQKPTEYL 981


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 204 HRVQRHIQDERVQRRAQLHQRHAPPPQQVLLLQ 302
           H    H+Q ++ Q ++Q  Q+H    +Q ++ Q
Sbjct: 173 HTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQ 205


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 180 PEKGGQVPHRVQRHIQDERVQRRAQLHQ 263
           PEKG +VP + +    DE  + + +L Q
Sbjct: 204 PEKGPKVPEKKKEDEIDEGKESKTKLSQ 231


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 29  PTVGCSPSSRPRTRTAT 79
           PT   SP++ P T T+T
Sbjct: 380 PTTTASPTTEPSTTTST 396


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = +3

Query: 135 LRRSRRGDIRGLARVPEKGGQVPHRVQRHIQDERVQRRAQLHQRHAPPPQQ 287
           +RR    D R    V     Q PH+   H Q    Q +AQ   +     QQ
Sbjct: 788 MRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQ 838


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 261 DAAGLVVVRVRPGYVSGLDEELVLLSQVRERGL 163
           D AGL ++       +     LV+L+ VRER L
Sbjct: 44  DRAGLAILLFLFSVATVFGNTLVILAVVRERYL 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,008
Number of Sequences: 438
Number of extensions: 2683
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)