Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      28   0.73 
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   3.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.9  

>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 507 AASPPASEGAADSVTVEPRDLASAACARFFFRISSKSLLL 388
           A +P    GA D + VE  D  + AC+ F  R    SLLL
Sbjct: 17  AINPSTLSGAIDVIVVEQED-KTLACSPFHVRFGKFSLLL 55


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 204 ACSPKGNRPQQPQHLRHRNTQSMKTK 281
           A   KG+RP +PQ  +  N Q  KT+
Sbjct: 148 AVRKKGSRPSKPQKEKQGNKQGSKTE 173


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 426  RFFFRISSKSLLLLNGLTPPAISFLPSVED 337
            R  FRIS   LLLL  +   ++S + S +D
Sbjct: 1544 RLLFRISVYDLLLLQSIAQASVSVISSYKD 1573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,364
Number of Sequences: 5004
Number of extensions: 27998
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)