Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118...    29   1.7  
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   4.0  
12_02_1279 + 27510605-27513301                                         28   5.2  
10_06_0113 - 10903419-10903439,10904452-10904726,10905082-109052...    27   6.9  
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460...    27   6.9  
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412...    27   9.1  

>07_03_1689 +
           28710936-28711129,28711283-28711341,28711858-28711892,
           28712123-28712226,28712325-28712397,28712495-28712553,
           28712656-28712721,28712815-28712898,28712995-28713059,
           28713152-28713342,28713522-28713612,28714076-28714134,
           28714732-28714872,28715214-28715321
          Length = 442

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 519 VIRLAASPPASEGAADSVTVEPRDLASAACARFFFRISSKSLLLLNGL 376
           ++ L  SPPA   AA  + +EP  L +AA  R +   +   L L NGL
Sbjct: 13  LVALVVSPPAVAAAASRMRIEP--LPTAALRRLYDTSNYGKLQLNNGL 58


>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 513  RLAASPPASEGAADSVTVEPRDLASAACARFFFRISSKS 397
            RL A P   E +ADS    P++    +C R   +++S +
Sbjct: 2398 RLQAEPSNQENSADSTVQTPQERVRLSCLRVLHQLASST 2436


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 444 ASAACARFFFRISSKSLLLLN 382
           A+ +C  FF+R SSKS  LLN
Sbjct: 400 ANCSCLGFFYRNSSKSCFLLN 420


>10_06_0113 -
           10903419-10903439,10904452-10904726,10905082-10905247,
           10905622-10905766,10905837-10905896,10905979-10906028
          Length = 238

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 340 FHRRQETYSRWSKTVQE*Q*FT 405
           FHR+Q TY RW + +++ Q  T
Sbjct: 12  FHRKQRTYLRWEQWIKKLQFIT 33


>04_04_0799 +
           28143878-28145042,28145127-28145290,28146008-28146070,
           28146268-28146491,28146850-28147555
          Length = 773

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 509 WQRRXQHRKEPRILLLLNREIWLQQL 432
           W+++ Q   E RIL +  RE W++ L
Sbjct: 671 WEQQNQEEGEERILAIRERERWMKML 696


>09_06_0267 +
           21938300-21938371,21938963-21939235,21940665-21941202,
           21941288-21941490,21941603-21941827
          Length = 436

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 134 RKLSKQIGVGSSCLCVARPLMLQALRNYELSFLRAVVLCL 15
           RKLS    +  SCLC+A PLM+    +    FL    +C+
Sbjct: 311 RKLSMSSMLYISCLCIA-PLMVPQTESLTTIFLFGARICI 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,682
Number of Sequences: 37544
Number of extensions: 199583
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)