Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.2  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    26   3.9  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.9  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   6.8  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   6.8  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   6.8  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.0  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +1

Query: 388 RLYNNLEPNSPLRYHVYYHVIELAARV 468
           RLY+ +   + +R++V Y+V+E+A R+
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIADRL 272


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 40  QVEKGIKMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDD 186
           ++ +GIK +G ++  +I+ +DQA     YF S   E  E  +    E D
Sbjct: 461 RISEGIKEEGISLSEEITDKDQAFASMGYFDSYNFEGVENSNSLNNEGD 509


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 87  VHKHSWPLHFNSFFDLYSFIYYLKA 13
           +H H+ PL   +FF  YS   +LKA
Sbjct: 352 LHYHNKPLEHKAFFQKYSSKRFLKA 376


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 519 KLFPKLLNSSEDFPDKSNSCSQFYDMIIY 433
           KLF   LN S D PD +    QFY++  Y
Sbjct: 658 KLFQVELNFSYDSPDVNLLIEQFYEITSY 686


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +1

Query: 112 ELRRYFKSLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEPSESDIEAILNS 264
           EL  Y   L   +IS +K+P+      +E+DL +++ + +   +E  E+D     NS
Sbjct: 4   ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  SCVYGHIPGRSGTRTEKIF*EPWRRDFRR 158
           S VYG +PG    + E++  E W   FR+
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQ 664


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 88  ISLEDQALELRRYFKSLGAEISEEKSPKGI--EDDLHKIVGVCDACFKEPSESDIEAIL 258
           I+L D      +     G ++       G+  + DLH I+G    C  E + SD+ A L
Sbjct: 230 ITLSDGTKRPCKIMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 50  KELKCKGQLCLWTYPWKIR 106
           ++L  +G +CLWTY +K R
Sbjct: 148 QKLVKQGLICLWTYSFKQR 166


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 125 ILRALAPRFQKKNHLRALRMICIR 196
           ILR LAP F +KN L+ L  +  R
Sbjct: 97  ILRLLAPFFTEKNALKVLEWLIRR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,781
Number of Sequences: 5004
Number of extensions: 37006
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)