Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330F09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 31 0.74
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 29 3.0
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 29 3.0
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 9.1
02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876 27 9.1
01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523... 27 9.1
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 30.7 bits (66), Expect = 0.74
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 13 CF*IINKRIQVEK-GI-KMQGPAVFMDISLEDQALELRRYFKSLGAEISEEKSPKGIED 183
C I++ RI ++ GI K+QG + +D+SL+ L K G E EE K +ED
Sbjct: 431 CGEIVDLRIMKDQNGISKLQGKRLAVDLSLDQDTLFFGNLCKDWGIEEFEELIRKALED 489
>04_04_1242 -
32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = +1
Query: 151 SEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAILNSIVSIMVSIPLERGENLILAFSQ 330
+E+ +P G+E LH +C A SE + A L + VS+ L RG+ + +Q
Sbjct: 283 TEQNNPVGLEVQLHITEALCPAL----SEPGLRAFLRFMTG--VSVCLNRGD--VDPKAQ 334
Query: 331 RLTKAPGPKLGMVALQSLWRLYNNLE 408
+L +A G L + + ++ + E
Sbjct: 335 QLAEAAGSSLVSIIVDHIFLCIKDAE 360
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 319 AFSQRLTKAPGPKLGMVALQSLWRLYNNLEPNSPLRYHVY 438
AFS+R K PK + L W L+ + P +R H+Y
Sbjct: 227 AFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSVRTHIY 266
>07_03_1479 -
26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 115 LRRYFKSLGAEISEEKSPKGIEDDLHKIVG-VCDACFKEPSESDIEAILNSIVSIMVSIP 291
LR YF++ A +S +P+G E+ HK+ V + + P + + ++ + + +
Sbjct: 49 LRCYFRAFSAILSNFTAPQGTENAEHKLRNVVIEILNRLPHSEVLRPFVQDLLKLSLRVL 108
Query: 292 LERGE-NLILA 321
+ E N +LA
Sbjct: 109 TQDNEDNALLA 119
>02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876
Length = 250
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 211 DACFKEPSESDIEAILNSIVSIMVSIPLERGENL 312
D FKE + ++ IL ++ I+V I + RGE L
Sbjct: 136 DESFKESLDELVQVILATVAFILVYIHIIRGEEL 169
>01_05_0735 -
24749975-24750601,24751411-24751541,24752150-24752336,
24753801-24753898,24754182-24754689
Length = 516
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 364 MVALQSLWRLYNNLEPNSPLRYHVYYHVIELAARVGFVREV 486
++A L +Y +L PN PL+ +Y+ +I +A + F+ ++
Sbjct: 195 LLAADCLEIMYTSLSPNGPLK--LYHFIIIVAVALAFLSQL 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,355
Number of Sequences: 37544
Number of extensions: 219967
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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