Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074...    27   6.9  
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826     27   9.1  
01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364...    27   9.1  

>07_03_0631 +
           20104332-20106802,20106904-20107030,20107352-20107479,
           20108771-20109083
          Length = 1012

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 299 ESHERNMKCLKIIGCLLVM 243
           E+ E NM CLK+  CL +M
Sbjct: 836 EAEEENMTCLKVHDCLAIM 854


>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
          Length = 196

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 496 GKSLPTGWVVPNPSI*NCQHFTHTDQTGSS 407
           G S+P G+ V   +   CQ +TH D T SS
Sbjct: 56  GLSVPPGFTVSTEA---CQQWTHVDHTSSS 82


>01_06_0009 -
           25535480-25535529,25536225-25536252,25536427-25536496,
           25537020-25537063,25538064-25538228,25538411-25538491,
           25539224-25540258
          Length = 490

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 508 LSQDGKSLPTGWVVPNPSI*NCQHFTHTDQTGSSSI 401
           L QDGK LP G VV +P +    +F H  +  +SS+
Sbjct: 370 LKQDGKVLPNGPVVISPDV----YFLHCTRKVASSL 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,451,295
Number of Sequences: 37544
Number of extensions: 157727
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)