Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical p...    31   0.50 
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical
           protein T06G6.3b protein.
          Length = 483

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 501 KTVNHYQLDGLCPIRVFRT--VSISRIQIKPAQAQLWKI*EELKK 373
           + VNH++LD  CPI++ ++  + +++ +I+    QL    + LKK
Sbjct: 181 RNVNHFKLDETCPIQIIKSERIKVAQNEIRELNKQLDAEQDPLKK 225


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -3

Query: 501 KTVNHYQLDGLCPIRVFRT--VSISRIQIKPAQAQLWKI*EELKK 373
           + VNH++LD  CPI++ ++  + +++ +I+    QL    + LKK
Sbjct: 209 RNVNHFKLDETCPIQIIKSERIKVAQNEIRELNKQLDAEQDPLKK 253


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 202 LIFLIRMEDSKDSI*IFELFLKHFRYYCELRI 107
           L+FL+    +K  + +F LFL +FR  C L I
Sbjct: 150 LVFLVSFRKTKGRLPLFSLFLLNFRNLCILSI 181


>AC006775-2|AAF60621.2|  557|Caenorhabditis elegans Hypothetical
           protein Y46H3B.1 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 436 NADSSKYSDWAQP 474
           N DSS YS+WAQP
Sbjct: 115 NGDSSTYSNWAQP 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,968
Number of Sequences: 27780
Number of extensions: 161626
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)