Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   0.97 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   1.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.0  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   3.9  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   3.9  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   3.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   5.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   5.2  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   6.8  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    25   6.8  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    25   9.0  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   9.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 202 TSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMS 372
           TSSQ S PP ++ DT+ +   + D    E NP   ++  +  +   ++++   + +S
Sbjct: 175 TSSQHSTPPLSISDTSTHTGSSTD--NVEANPNTGFSSARKRSLRSSNLKKKFVPLS 229


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 196 SATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQD 324
           +A SS  S PP +  +T A N+D +     + NP   Y+ P D
Sbjct: 92  TAPSSAQSVPPTSSAETTADNSDTE----MKLNPIPAYSVPAD 130


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 361 CFPVPCRFLLWHNLGGTHKCQL 296
           C P PCR L+W +L    + +L
Sbjct: 170 CIPSPCRKLVWQSLVSAERNEL 191


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 178 KGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYP 318
           KG++ L  T + ASY PA       YN   K+F+ +  +    Y  P
Sbjct: 144 KGLNGLFTTRALASYLPA---QEAVYNKYFKEFLAHSKDDYAQYMIP 187


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 430 KNQMSTANNYKIFQKIPASSMILSNYD 510
           +N +S     KIF+ IP+  ++LS +D
Sbjct: 289 QNHLSYNTTMKIFELIPSIKLVLSGHD 315


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 167 FPKLPSILGRNIANRIVFINTCPPI 93
           FP LP +  RNI+N  +   T P I
Sbjct: 48  FPTLPRLAARNISNSGILSRTTPVI 72


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 184 ISHLSATSSQASYPPANMDDTN 249
           IS +S+  S+ +YPP+ +DD++
Sbjct: 252 ISKVSSYGSRQTYPPSGIDDSS 273


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 139 LPSILGSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGY 285
           LP I GSF K+   G    +A  +   + P N  ++N Y+ D+   +GY
Sbjct: 517 LPYIPGSFIKVYKNGSYMGTAFENLLDFNPPNSINSNHYSFDDGS-LGY 564


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 187 SHLSATSSQASYPPANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYAT 333
           S  SA+S Q    P + D  + +     +++   T+PT + A+P  +++
Sbjct: 147 SSFSASSQQNPSSPGSNDIKSEFAAVKNEYVLSPTSPTTSAAFPSSFSS 195


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 112 IKTILFAMFLPSILGSFGKILGKGISHLSATSSQASYPPANMD 240
           IK  + A+ L +++    KI+G+G++ +SA        P N D
Sbjct: 5   IKWAIIAVLLSTVVAK--KIVGEGMADVSAIKHPEEVHPTNRD 45


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/43 (23%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 184 YLFLISSRSYRVYLAGTSRTE-SSLSTPALRSAAAGKTCLNRR 59
           +LFL+++ S  +++ G +RT+  +L  P+  ++ +  T ++++
Sbjct: 12  WLFLLAAVSCTLFIYGVTRTDLQTLKNPSSLTSPSSSTSVDKK 54


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/76 (19%), Positives = 35/76 (46%)
 Frame = +1

Query: 229 ANMDDTNAYNNDNKDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVTYL 408
           ++ + +  Y +D+++++   +NP   +A P+D  T+     P  +++      G  +  L
Sbjct: 561 SSFESSKNYKSDHREWL---SNPWVGFASPKDLMTKILPSYPTGVNIDTLKQIGKALYTL 617

Query: 409 PSKNSYYKNQMSTANN 456
           P     ++N     NN
Sbjct: 618 PEGFDAHRNLKRILNN 633


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 115 KTILFAMFLPSILGSFGKILGKGISHLSATSSQASYPPANMDDTNAYNND 264
           +T+ +A    +   SF  I+ +G SH+   S+ +  P A    T   N D
Sbjct: 599 RTVGYASPSNASTASFNDIVQRGRSHVRTGSNNSEAPLAAKTSTTKRNGD 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,732
Number of Sequences: 5004
Number of extensions: 46244
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)