Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    31   0.74 
01_06_0394 - 28977800-28978135,28978222-28978494,28978603-289790...    29   2.3  
11_03_0184 + 11317787-11318198,11318337-11318671,11318756-113190...    29   3.0  
11_06_0215 - 21332429-21333037,21333605-21333649                       28   4.0  
02_03_0102 - 15238808-15239437,15241609-15243264                       28   4.0  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   5.2  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     27   9.1  

>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 283 YETNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSYYKNQMSTANNYK 462
           Y+ +PT + A P     +  +++  N     YG GG  ++  P   S   N M + N   
Sbjct: 449 YQKSPTSSNASPGGSPAQHQNIDNINSAFLNYGLGGYPLS--PGLPSMMMNCMGSGNMPP 506

Query: 463 IFQKIPASSMILS 501
           +F+   A+S I S
Sbjct: 507 LFESAAAASAIAS 519


>01_06_0394 -
           28977800-28978135,28978222-28978494,28978603-28979013,
           28979157-28979273
          Length = 378

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 133 MFLPSILGSF-GKIL-GKGISHLSATSSQ---ASYPPANMDDTNAYNNDNKDFMGYETNP 297
           +FL  + GSF G++   K +  + + SS    +  PP  +D+TN   N  K F+   + P
Sbjct: 143 VFLSGVPGSFYGRLFPSKNVHFVCSFSSLHWLSQVPPGLLDETNGPVNKGKMFISSTSPP 202

Query: 298 TGTYAYPQDY 327
               AY + +
Sbjct: 203 AVAAAYSRQF 212


>11_03_0184 +
           11317787-11318198,11318337-11318671,11318756-11319048,
           11319125-11319483,11319549-11319748,11319823-11320012,
           11320084-11320188,11320262-11320338,11320428-11320649
          Length = 730

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = +1

Query: 316 PQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSYYKNQMSTANNYKIFQKIPASSMI 495
           P D    G D  P N+D S     GP     PS N    + +  +N   I  +  A + +
Sbjct: 349 PSDIDPSGKDSNPTNVDTSSSKETGPTAEDHPSDNQPATDNVEPSNEPPIGNQ-SAEAEV 407

Query: 496 LSNYDP 513
            +N +P
Sbjct: 408 GANQEP 413


>11_06_0215 - 21332429-21333037,21333605-21333649
          Length = 217

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +1

Query: 235 MDDTNAYNNDNK-DFMGYE-TNPTGTYAYPQDYATEGNDMEPGNIDMSRYGAGGPKVT 402
           +D    YN D K D   +E  N   TYA+P + A E +D  P       +  G  +V+
Sbjct: 47  IDQQTCYNIDRKFDSSDHEGLNDMSTYAHPINIAKEDSDTLPSPTCPDNFSPGTSRVS 104


>02_03_0102 - 15238808-15239437,15241609-15243264
          Length = 761

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 139 LPSILGSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGYETN 294
           L  I  SF KIL  G+ HL A+ +    P  +   T +Y  D+ ++   E N
Sbjct: 570 LGEISASFKKILHSGLEHLVASVAPRVRPVLDTVATVSYELDDAEYGENEVN 621


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 154 GSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDN 267
           GS+G++  +G           + PP++    NAYN+D+
Sbjct: 298 GSYGQVPPQGPPSYGGPGGDYAAPPSSYGGNNAYNSDS 335


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +1

Query: 166 KILGKGISHLSATSSQASYPPANMDDTN--AYNNDNKDFMGYETNPTGTYAYPQDYATEG 339
           K L K +  L  T  + S    N + T+  A + D+++ M   + P G  +   +  ++ 
Sbjct: 454 KPLAKRVEPLWITKGRRSQRKRNTEKTHTIAEDGDSQNVMVKTSEPLGVDSTKVEQISQS 513

Query: 340 NDMEPGNIDMSRYGAGGPKVTYLP 411
            D   G + + +    G  V +LP
Sbjct: 514 KDAVQGPLQIQKDKVQGKAVDFLP 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,026
Number of Sequences: 37544
Number of extensions: 322598
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)