Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330F03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 32 0.29
Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z74032-2|CAA98466.2| 248|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL031620-3|CAA20928.1| 310|Caenorhabditis elegans Hypothetical ... 29 2.7
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 4.7
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 4.7
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 28 4.7
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 28 4.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 4.7
Z81147-4|CAB03529.1| 578|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81057-5|CAB02917.2| 846|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 27 6.2
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 27 8.1
U80840-13|AAB37936.2| 182|Caenorhabditis elegans Hypothetical p... 27 8.1
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 27 8.1
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 463 SCSYLQWTSGFCSSYSCLVGR-LLWVHQRRILTCQCFPV 350
SCS L W +C +Y C+V + W R +L Q FPV
Sbjct: 30 SCSLLYWNLLYCKNYDCVVEKEFRWGSTRHLL--QYFPV 66
>Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical
protein F26H11.4 protein.
Length = 739
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 148 ILGSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGYE 288
I+ S G +L I S SS + PP D T +NN + ++
Sbjct: 553 IMHSLGCLLDTAIVKFSQQSSSSQPPPMRRDSTAVFNNSYNQYTSFQ 599
>Z74032-2|CAA98466.2| 248|Caenorhabditis elegans Hypothetical
protein F35B12.3 protein.
Length = 248
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 268 KDFMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY--GAGGPKVTYLPSKNSYYKNQM 441
+ + GY++N +YP+ Y + M +D++ Y G P+ PS SY
Sbjct: 85 RGYQGYQSNQRSQGSYPERY---DSSMYSPVMDLTNYYGSQGTPQYYGYPSSASYQMTPY 141
Query: 442 STANNYKIFQKIPASSMILSNYDPFY 519
N Q+ ++ S++ P Y
Sbjct: 142 YQNQNQGYMQQQQYNTPSQSSWSPMY 167
>AL031620-3|CAA20928.1| 310|Caenorhabditis elegans Hypothetical
protein C18B12.3 protein.
Length = 310
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 167 FPKLPSILGRNIANRIVFINTCPPISSGRKNLFKPKDLKP 48
FP LP +L ++ A + + PP+ G + P++L P
Sbjct: 13 FPDLPMLLPKSEALSVTTDFSVPPVQQGAQQFHPPRNLGP 52
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 430 CSSYSCLVGRLLWVHQRRILTCQCFPV 350
C+S SCLVG +HQ + T C P+
Sbjct: 329 CASTSCLVGSQCVLHQVQCFTQPCDPI 355
>Z98877-3|CAB54472.2| 537|Caenorhabditis elegans Hypothetical
protein Y69H2.3a protein.
Length = 537
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 430 CSSYSCLVGRLLWVHQRRILTCQCFPV 350
C+S SCLVG +HQ + T C P+
Sbjct: 434 CASTSCLVGSQCVLHQVQCFTQPCDPI 460
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +2
Query: 185 SLTCQRLPVKLAIPRLXXXXXXXXXXXXXXSWDMR----LTQLALMRTPKIMPQKETTWN 352
S+ QR P + + R W MR Q+AL+ PKI E WN
Sbjct: 213 SVQAQRQPTLITLARRHLECKTKRVVVVVGPWSMRGQLVQDQIALLADPKIQESAEKEWN 272
Query: 353 R 355
+
Sbjct: 273 Q 273
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +2
Query: 185 SLTCQRLPVKLAIPRLXXXXXXXXXXXXXXSWDMR----LTQLALMRTPKIMPQKETTWN 352
S+ QR P + + R W MR Q+AL+ PKI E WN
Sbjct: 213 SVQAQRQPTLITLARRHLECKTKRVVVVVGPWSMRGQLVQDQIALLADPKIQESAEKEWN 272
Query: 353 R 355
+
Sbjct: 273 Q 273
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 142 PSILGSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDNK 270
P GS G+ + G S Q SYP A N Y+ N+
Sbjct: 3032 PQGYGSTGQNVPGGYQQGQQQSGQGSYPQAQQQQPNQYSGSNQ 3074
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = +1
Query: 217 SYPPANMDDTNAYNNDNKD--FMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY--GA 384
+YP + N ++N + F Y T GTY++ DY+ N + N S Y
Sbjct: 2 AYPYPVFNAENVFDNTQQQVGFYDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYYPTAM 61
Query: 385 GGPKVTYLPSKNSYYKNQMSTANNYKIFQKIPASS 489
+ P+ S + +T ++ P++S
Sbjct: 62 DSSSLNISPTTGSPNSSHFTTFTHFSTPSTSPSTS 96
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = +1
Query: 217 SYPPANMDDTNAYNNDNKD--FMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY--GA 384
+YP + N ++N + F Y T GTY++ DY+ N + N S Y
Sbjct: 2 AYPYPVFNAENVFDNTQQQVGFYDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYYPTAM 61
Query: 385 GGPKVTYLPSKNSYYKNQMSTANNYKIFQKIPASS 489
+ P+ S + +T ++ P++S
Sbjct: 62 DSSSLNISPTTGSPNSSHFTTFTHFSTPSTSPSTS 96
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = +2
Query: 185 SLTCQRLPVKLAIPRLXXXXXXXXXXXXXXSWDMR----LTQLALMRTPKIMPQKETTWN 352
S+ QR P + + R W MR Q+AL+ PKI E WN
Sbjct: 213 SVQAQRQPTLITLARRHLECKTKRVVVVVGPWSMRGQLVQDQIALLADPKIQESAEKEWN 272
Query: 353 R 355
+
Sbjct: 273 Q 273
>Z81147-4|CAB03529.1| 578|Caenorhabditis elegans Hypothetical
protein T09E11.5 protein.
Length = 578
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -2
Query: 511 GHSCSGSWRTPVFFGRSCSYLQWTSGFCSSYSCLVGRLLWVHQRR 377
G+ C+ S + +++ S + + + S F S+ L+G ++++ QRR
Sbjct: 171 GYYCALSLSSLIYYLASHTSVSFNSVFARSWQFLIGMVVYLKQRR 215
>Z81057-5|CAB02917.2| 846|Caenorhabditis elegans Hypothetical
protein F10D11.6 protein.
Length = 846
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 313 YPQDYATEGNDMEPGNIDMSRYGAGGPKVTYLPSKNSYYKNQMS 444
Y Q YAT + + S YG GG P++ YY QM+
Sbjct: 463 YIQSYATSNDYSIDLTGEFSPYGQGGTPFGPFPTQFPYYGGQMA 506
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = +2
Query: 329 PQKETTWNRETLTCQDTALVDPK*PTYQARIATTKTRCPLQITTRSSKKYRRPP 490
P TT + T T T T R TTKT Q TT + RRPP
Sbjct: 355 PPTTTTTLQTTTTRPQTTKTTTTPQTTTTRPQTTKTTTTPQTTTTRLQTTRRPP 408
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 SYPPANMDDTNAYNNDNKD--FMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY 378
+YP + N ++N + F Y T GTY++ DY+ N + N S Y
Sbjct: 2 AYPYPVFNAENVFDNTQQQVGFYDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYY 57
>U80840-13|AAB37936.2| 182|Caenorhabditis elegans Hypothetical
protein F08D12.13 protein.
Length = 182
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +1
Query: 154 GSFGKILGKGISHLSATSSQASYPPANMDDTNAYNNDNKDFMGY 285
GSFG++ G A S PP M N N D M Y
Sbjct: 119 GSFGQMPSSGSQQHEALCKTNSLPPQYMSQQQPQNAQNYDQMMY 162
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 SYPPANMDDTNAYNNDNKD--FMGYETNPTGTYAYPQDYATEGNDMEPGNIDMSRY 378
+YP + N ++N + F Y T GTY++ DY+ N + N S Y
Sbjct: 2 AYPYPVFNAENVFDNTQQQVGFYDYSTPFNGTYSFTTDYSYYNNYYDYVNTYASYY 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,162,823
Number of Sequences: 27780
Number of extensions: 267155
Number of successful extensions: 889
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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