Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   1.3  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   2.2  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   5.2  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   5.2  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   9.0  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 363 TIKNVLNWKHVERSSSYNR--RESTITPSVSDYDS 461
           T    + W   +   +  R  R STITPSVS+Y S
Sbjct: 3   TTTETVTWSQYKPQETQRRLSRSSTITPSVSEYRS 37


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 54  CCEFSIDLFGCFPRAEF 4
           C +F+ +L  CFP AEF
Sbjct: 108 CYDFASELLDCFPNAEF 124


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 5   NSARGKHPNKSMLNSQQNNFIW 70
           N  R  HP KS L   +N  +W
Sbjct: 348 NDLRKYHPKKSSLQCMENTLLW 369


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 90  LITFINNHIKLFCCEFSIDLFGCFPRAEF 4
           +I F+++H++LF  E     FGC P  E+
Sbjct: 109 IIDFMSDHVELFIKEHFPSKFGC-PEEEY 136


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 370 LIVKKIYITSFLFYCFLLWIHLVAANQ-ETIDILH 269
           L+++  ++  F  Y F L +HL+  N+ +   +LH
Sbjct: 16  LVLRLFFLVVFGLYSFTLILHLLVINRVDVFSLLH 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,304
Number of Sequences: 5004
Number of extensions: 32196
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)