Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   5.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   5.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 382 FRTFLIVKKIYITSFLFYCFLLWIHLVAANQETID 278
           F+  ++VKK+ I   +FY  +++  +   N+E  D
Sbjct: 10  FQNVVLVKKVKIVLLIFYGSIMF-SMTQVNKEECD 43


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 29  NKSMLNSQQNNFIWLFINVINSVQVVI 109
           N    N+  NN+  L+ N+IN  Q+ +
Sbjct: 320 NNYNYNNYNNNYKPLYYNIINIEQIPV 346


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 44  NSQQNNFIWLFINVINSVQVVI 109
           N+  NN+  L+ N+IN  Q+ +
Sbjct: 343 NNNYNNYKKLYYNIINIEQIPV 364


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 5   NSARGKHPNKSMLNSQQNNFIWLFINVINSVQVVI 109
           N     + N +  N+  NN   L+ N+IN  Q+ +
Sbjct: 332 NYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPV 366


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 8    SARGKHPNKSMLNS 49
            SA G HPN ++L+S
Sbjct: 1726 SAAGLHPNNTLLHS 1739


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 8    SARGKHPNKSMLNS 49
            SA G HPN ++L+S
Sbjct: 1722 SAAGLHPNNTLLHS 1735


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 422 SPIVGTTSLDVFPIQDI 372
           SP  G+T  D+  +QD+
Sbjct: 359 SPFPGSTEADIIELQDL 375


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 174 YQRFFFV*TEKALLTL*ARNVAITTCTELITFINNHI 64
           YQR+F    +  L  L A       C  +IT +NN I
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVI 97


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 174 YQRFFFV*TEKALLTL*ARNVAITTCTELITFINNHI 64
           YQR+F    +  L  L A       C  +IT +NN I
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVI 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,549
Number of Sequences: 438
Number of extensions: 2436
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)