Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330E06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.045
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 29 0.42
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 29 0.56
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 28 0.73
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 28 0.97
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 1.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.7
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 27 1.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.2
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.2
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 3.0
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.0
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 26 3.9
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro... 25 5.2
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 5.2
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 5.2
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 25 5.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 6.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 9.0
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.045
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = -1
Query: 224 SSVTCL*SSGIITSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSSLMTGA 54
SS T SS ITSS S T+S A + SS + PS + G TSS+ T +
Sbjct: 926 SSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATAS 982
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 203 SSGIITSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSSLMTGAN*TFNVTS 30
SS + S S + A+ A S SS + S TG++ I ++ +TG+ T +VT+
Sbjct: 1041 SSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSP-TSSVTA 1097
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 188 TSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSS 69
TSS SH T++ +V + GSST + S T Y +SS
Sbjct: 554 TSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSS 593
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 361 SKTLTVRSGSTVKLACNVLYGNPAPSLKWKFI 456
S+ L VR GST++ CN ++ A LK+ +
Sbjct: 303 SEALIVRKGSTIEQVCNRIHRTLAEQLKYALV 334
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 262 NLSTTQ*IYVYSDHL*RVFDP 200
NLS Y Y DH+ R+FDP
Sbjct: 185 NLSLLDNFYYYQDHIDRIFDP 205
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 382 SGSTVKLACNVLYGNPAPSLKWKFINKDSTSRLL 483
S L V Y NP PSL W ++ DS L+
Sbjct: 69 SNKQASLESPVSYSNPIPSLTWLSLDGDSPDSLV 102
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = -1
Query: 512 KVNELVLLFLS-SLDV-ESLFMNFHFKDGAGLPYRTLHASLTVEPERTVN 369
K + L++ F S S+++ E LF + F+ G+G R A++ + E+TVN
Sbjct: 158 KGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVN 207
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 85 PQTVPVKEGDNVELPCDVTASPEAVVRWEMSQDDVIIPLDQRH 213
P P + GD++ D+ +S A + ++S+D+ I +QRH
Sbjct: 63 PVGSPTRNGDDIPSTLDLYSSDNAAIDTDISEDETI---NQRH 102
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 310 KTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGN 426
K ++++L+APY P+S+ + +++ +T K L GN
Sbjct: 694 KLDVLSILIAPYKSLPRSRYMGIQAINTNKCKLAFLSGN 732
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 271 YHCIAENALGTAKKTILVNVLVAPYIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLKWK 450
+ C +G + IL+ L A +TP S TLT + S + +VL + PSL+ +
Sbjct: 86 HDCPTTKGIGYFLEPILILCLFA---KTPTSLTLTGVTSSNEDIGVDVLRTSVLPSLQKR 142
Query: 451 F-INKDSTSRLLR 486
F + + R+L+
Sbjct: 143 FQVGDELELRILK 155
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 200 SGIITSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSSLM 63
S +SS + TAS +VT G+ T S +FT + Y SS++
Sbjct: 310 SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVI 355
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 200 SGIITSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSSLM 63
S +S+ + TAS ++T G+ T S +FT + Y SS++
Sbjct: 364 SSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVI 409
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 200 SGIITSSCDISHLTTASGDAVTSQGSSTLSPSFTGTVWGYITSSLM 63
S +S+ + TAS VT G+ T S +FT + Y SS++
Sbjct: 418 SSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVI 463
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -1
Query: 203 SSGIITSSCDISHLTTASGDAVTSQGSSTLSPSFT 99
SSG ++S S + +SG +++S GSS++S S+T
Sbjct: 431 SSGSSSASTTASSSSVSSGSSISS-GSSSMSTSYT 464
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 343 YIETPQSKTLTVRSGSTVKLACNVLYGNPAPSLK 444
Y++ Q R+ ST K+A +Y N AP+LK
Sbjct: 339 YLKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLK 372
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 303 SKENHSSKCLSGPIHRNTTVKNIDS 377
S + H SK LS IH +T KN+DS
Sbjct: 320 STKVHPSKKLSVYIHHGSTKKNLDS 344
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 196 PLDQRHVTDDQNTHRFTALWRD 261
PL R+ +D + H FT WRD
Sbjct: 25 PLGLRYRSDASSLHLFTPTWRD 46
>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 202 DQRHVTDDQNTHRFTALWRDSGHYH 276
D+R V++ +NT ++ RDS +YH
Sbjct: 123 DERLVSNIKNTQTKDSITRDSAYYH 147
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +1
Query: 58 PVIKDDVIYPQTVPVKEGDNVELPCD-----VTASPEAVVRWEMSQDDV 189
P+I DV P + VKE + + +P ++RW +DDV
Sbjct: 531 PIIVGDVYRPAPMTVKESQYAQSITSKPMKGMLTAPITILRWSFPRDDV 579
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 203 SSGIITSSCDISHLTTASGDA-VTSQGSST 117
SS ++ SS +++ TT+S A TS GSS+
Sbjct: 130 SSSVVASSSEVASSTTSSAAASATSTGSSS 159
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = +1
Query: 58 PVIKDDVIYPQTVPVKEGDNVELPCDVTASPEAVVRWEMSQDDVI-----IPLDQRH 213
P + + YP + P+ CD+ +SP +V + S D +P+ Q H
Sbjct: 11 PCLNNPPTYPWSSPILSSIANPSLCDIVSSPSSVSSFASSDDFAFMNAYCLPIQQNH 67
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 422 PYRTLHASLTVEPERTVNVFDCGVSMYGATK 330
PYR + E E NVFDC S+ TK
Sbjct: 298 PYRLRDPTQGSEEEMMENVFDCLCSLVQETK 328
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 261 FRSLSLYCRKCPGNSKENHSSKCLSGP-IHRNTTVKNIDSSFRLNCQTSVQRS 416
F + +CR C G SSK LS P + N V+ DS + L + +S
Sbjct: 185 FTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYSLRTKPKGSKS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,761
Number of Sequences: 5004
Number of extensions: 47580
Number of successful extensions: 147
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -