Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330E06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 29 1.7
09_01_0111 + 1727021-1727206,1727324-1727373,1727440-1727491,172... 29 3.0
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 29 3.0
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 28 5.2
09_02_0083 + 4081564-4081677,4081853-4082359 28 5.2
03_02_0583 + 9635002-9637299 28 5.2
02_03_0135 - 15602404-15602850,15603332-15603588,15605095-156052... 28 5.2
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 27 6.9
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 27 6.9
01_03_0306 + 14875755-14876822 27 6.9
12_02_0268 + 16610502-16611215 27 9.1
12_01_0501 + 3976156-3976292,3976364-3976949 27 9.1
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 331 RHLLEWFSLLFPGHFRQYSDND 266
+ +L+W LFPGH + Y +ND
Sbjct: 108 QRMLDWIRDLFPGHVKFYVEND 129
>09_01_0111 +
1727021-1727206,1727324-1727373,1727440-1727491,
1727553-1727598,1727671-1727690,1727897-1727983,
1729290-1729466,1729542-1729565,1729639-1729725,
1729799-1729870,1730622-1732496
Length = 891
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 91 TVPVKEGDNVELPCDVTASPEAVVRWEMSQDDVIIPL 201
TV +++GD++ELP + +A+V + +D + P+
Sbjct: 759 TVYLRDGDDIELPYSIENCEKALVEKDSDGEDSVAPV 795
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 258 RFRSLSLYCRKCPGNSKENHSSKCLSGPIHRNTTVKNIDSSFRLNCQTSVQRSIR 422
R + SL C GN H +C++ +++V ID+S +L+C++ V +R
Sbjct: 201 RIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDAS-KLDCKSRVAALLR 254
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 52 FAPVIKDDVIYPQTVPVKEGDNVE-LPCDVTASPEAVVRWEMSQDD 186
F+ + D P T V VE L DVTA+ E + RW+M+ ++
Sbjct: 456 FSELFYTDACMPTTKRVMYTLKVEGLMMDVTAAEEEIKRWKMAAEE 501
>09_02_0083 + 4081564-4081677,4081853-4082359
Length = 206
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 76 VIYPQTVPVKEGDNVELPCDVTASPEAVVRWEMSQDDVIIPLDQRHVTDD 225
VIY +T P K+ N+ELP + + V +S+D+ + HVT D
Sbjct: 153 VIYYRTTPKKQNKNLELPTVTPVAKDTSV-GPISKDNDLNGSTASHVTID 201
>03_02_0583 + 9635002-9637299
Length = 765
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 1 AVNLKGESSAEVTLKVQFAPVIKDDVIYPQ-TV--PVKEGDNVELPCDVTASPEA 156
AV L GE LKV A V++DD++YP TV + LP ++AS +A
Sbjct: 174 AVTLNGEPLGGRMLKVISAYVMQDDLLYPMLTVAETLMYSAEFRLPRSLSASKKA 228
>02_03_0135 -
15602404-15602850,15603332-15603588,15605095-15605200,
15605500-15605630,15606159-15606223,15606345-15606409,
15606560-15606955
Length = 488
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 439 LKWKFINKDSTSRLLRNNRTSSLTLNN 519
LKW ++ S S LRNNR SL +N
Sbjct: 266 LKWNELDPPSRSEQLRNNRVCSLYQHN 292
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 355 PQSKTLTVRSGSTVKLA---CNVLYGNPAPSLKWKFINKDSTSRLLRNNR 495
P K T+R G+ V+L CN + G + S ++N + ++LR R
Sbjct: 71 PLVKDATLRPGTVVQLTDFMCNTIQGKRSNSHSSLYVNMGDSEKVLRKMR 120
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 224 SSVTCL*SSGI-ITSSCDISHLTTASGDAVTSQGSSTLSPS 105
S V+C SSG TSSC IS ++A+ S SS S S
Sbjct: 67 SGVSCTISSGSSATSSCTISSGSSATSSCTISSSSSGSSTS 107
>01_03_0306 + 14875755-14876822
Length = 355
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 315 GFLC-CSQGIFGNTVIMTGISPQRSESMC 232
G+LC CS+G GN + G + + S S+C
Sbjct: 273 GYLCNCSEGYQGNPYLPDGCTGKFSSSLC 301
>12_02_0268 + 16610502-16611215
Length = 237
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 163 RWEMSQDDVIIPLDQRHVTDDQNTHRFTALWRDSGHYHCIAENALGTAKKTILV 324
+WEM D +P D + + + HRF A D Y + + T KK + +
Sbjct: 153 QWEMVHD-TNLPFDGQALPLGSDDHRFVAAAADVAVYRMVVGISAVTGKKELTI 205
>12_01_0501 + 3976156-3976292,3976364-3976949
Length = 240
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 79 IYPQTVPVKEGDNVELPCDVTASPEAVVRWEMSQDDVIIPLDQRHVT 219
IY +T P K+ N+ELP + + + +S DD + H T
Sbjct: 187 IYYRTTPKKQDKNLELPTVAPIAKDTSIVAPVSNDDDVNGSTASHAT 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,625
Number of Sequences: 37544
Number of extensions: 310874
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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