Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    29   0.32 
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    25   5.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.0  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   9.0  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 76  KTKSRSKRQRRCRANQTHNRDSSDN---FSGKR--VRAQQRCDRN 195
           K+K R  R R  R+NQ  +R+ SDN    S KR   R   R DRN
Sbjct: 166 KSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRN 210


>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 220 TFRQTKTFSSDRNAVEPGRVFLKNCRCCRDCVFGLHDIVV 101
           +F    T  S    VE G    KNC+  ++C+ GL ++ +
Sbjct: 73  SFAGHPTIGSCFAVVESGYCTPKNCKIIQECLAGLVELTI 112


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +3

Query: 66   SGMQNKVAIKATTTMSCKPNTQSRQQRQFFRKTRPGSTALRSELNVL 206
            +G  +  A+K   +   KP+T +R+Q+              S++N++
Sbjct: 1245 AGSSSSTAVKKEASSESKPSTTNRKQQTLLEFAASKEPEKSSDINIV 1291


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 301 YFNETTL*LPNCLFIL*CYYPLH 369
           +F E  L  P CLFI+  +Y LH
Sbjct: 28  FFFELRLFSPQCLFIVYFFYLLH 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,063
Number of Sequences: 5004
Number of extensions: 33110
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)