Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1728 + 29076733-29079069                                         30   1.3  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   2.3  
05_04_0060 + 17576427-17578781                                         28   5.2  
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    27   9.1  

>07_03_1728 + 29076733-29079069
          Length = 778

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 35  DSRSRCQRQSVR-NAKQSRDQSDNDDVVQTKHTIATAATIFQENASGLNSVAIGTECFGL 211
           D+ +RC  + +   +    D   +D V    HT +TAA  F + A+ +N + +GT   G+
Sbjct: 186 DTAARCNNKLIGVKSFIPGDNDTSDGVGHGTHTASTAAGNFVDGAA-VNGLGVGTVA-GI 243

Query: 212 SESLNTLLYRLTRAVCC 262
           +   +  +YR+     C
Sbjct: 244 APGAHIAMYRVCTVEGC 260


>02_05_0640 -
           30558523-30559027,30559123-30559252,30559388-30559868,
           30560292-30560346,30560537-30560613,30561228-30561315,
           30561490-30561593,30562050-30562231,30562347-30563109,
           30563195-30563438,30564513-30564658,30565158-30565283,
           30565404-30565517,30565595-30565762,30566283-30566528,
           30566605-30566767,30566970-30567064,30567274-30567357,
           30567769-30568055,30568359-30568572,30568923-30569140,
           30569386-30569623,30570312-30571118,30571202-30571301,
           30571694-30571737,30571824-30571973
          Length = 1942

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 120 PNTQSRQQRQFFRKTRPGSTALRSELNVLVCLKV 221
           PN Q  ++    R+T P S +L S L++ +CLK+
Sbjct: 641 PNLQPNERMTMMRETYPLSMSLLSGLSINLCLKL 674


>05_04_0060 + 17576427-17578781
          Length = 784

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 44  SRCQRQSVRNAKQSRDQSDNDDVVQTKHTIATAATIFQENASGLNSVAIGTECFGLSESL 223
           +RC  + V  A         D+V    HT ATAA  F +  S    +A GT   G++   
Sbjct: 200 ARCNNKLVGAASFVYGNETGDEVGHGTHTAATAAGRFVDGVSAF-GLAAGT-ASGMAPGA 257

Query: 224 NTLLYRLTRAVCC 262
           +  +Y++     C
Sbjct: 258 HLAMYKVCNDQGC 270


>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 76  KTKSRSKRQRRCRANQTH-NRDSSDNFSGKRVRAQQR 183
           K KSR+K+    +ANQ     D+S + S K  + Q++
Sbjct: 774 KAKSRAKKDAESKANQEKATEDASGSSSSKATKTQEK 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,590
Number of Sequences: 37544
Number of extensions: 186906
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)