Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   2.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 315 HFITSQLLVYIIMLLSIALKC 377
           H IT  L  ++++LL I  KC
Sbjct: 10  HLITVLLFSFVVILLIIPSKC 30


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 315 HFITSQLLVYIIMLLSIALKC 377
           H IT  L  ++++LL I  KC
Sbjct: 10  HLITVLLFSFVVILLIIPSKC 30


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 283 CTLDLCYFNETTL*LPNCLFIL*CYYPLH*NVLFNSTLRTVL*FNNNILTS*LLKPFIMS 462
           C+ D    +E T     C+FI     PL   +LF S L + +  +  +L     K  + S
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKS 265

Query: 463 LL 468
           L+
Sbjct: 266 LV 267


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 73  CKTKSRSKRQRRCRANQTHNRDSSDNFSGKRVRAQQR 183
           CKT+   +R    R +Q  N  SSD       +   R
Sbjct: 345 CKTRIIGRRSWVTRESQICNNSSSDKERNSSFKCSMR 381


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +1

Query: 283 CTLDLCYFNETTL*LPNCLFIL*CYYPLH*NVLFNSTLRTVL*FNNNILTS*LLKPFIMS 462
           C+ D    +E T     C+FI     PL   +LF S L + +  +  +L     K  + S
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVKS 265

Query: 463 LL 468
           L+
Sbjct: 266 LV 267


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 80   QSRDQSDNDDVVQTKHTIATAA 145
            + RDQ  +DD  +   T+  AA
Sbjct: 1089 RKRDQKQSDDKTKETSTVTAAA 1110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,826
Number of Sequences: 438
Number of extensions: 2273
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)