Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    28   0.73 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.7  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.2  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    26   3.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   3.9  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   6.8  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   9.0  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 393 EVEYPRALTKYPVDDDVTQIKFTEKNKIA 479
           ++EY + + ++ V DDV  + FT  NK A
Sbjct: 513 DIEYGKIVDEWKVHDDVPLVTFTPDNKFA 541


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 514 SSIFTSPLDIETAILFFSVNFICVTSSST 428
           S I + P+     +LF+ + FI V SSST
Sbjct: 144 SDITSRPMTYTLVLLFYVIGFIVVASSST 172


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 517 ISSIFTSPLDIETAILFFSVNFICVTSS 434
           I +I+   LD++ ++LF S NF  +T S
Sbjct: 18  IDNIYVLELDLDGSVLFASTNFSQITGS 45


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 390 EEVEYPRALTKYPVDDDVTQIKFTEKNKIAVSISN 494
           E+V+   A+ K P DDD+ +I    K  I ++ +N
Sbjct: 62  EKVQLKSAVLKAPFDDDLMKISPMIKEDIDIAFNN 96


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
 Frame = +3

Query: 165 REVCLFIFCCVLVHFMTH---LYTKMSIDIQGTFV-------SQKINKVRWIPEDYAETK 314
           +E CLF+ C  +V F+ H       +S+DI+   +       S   N   W+P  Y E  
Sbjct: 364 QEFCLFLACSFVVSFLLHGSFFLAVLSVDIRRLELQDFLDSNSSNRNSKWWVP--YLEYV 421

Query: 315 CFLTGSW 335
            F+   W
Sbjct: 422 RFMWSPW 428


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 336 DDEVNLITVWTFESVNEDEEV 398
           DDE    ++W+F   N+D EV
Sbjct: 498 DDEFRFQSLWSFHHPNKDSEV 518


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 155 IRHEGSVFIYLLLCSCSFYDPFVYKNVNRYSRNVCFSK 268
           +R  GS +  +L  +  F  P     + +Y R VCFSK
Sbjct: 294 VRMFGSAYRAVLHFAEIFPQPIFQDYLQQYKRAVCFSK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,359
Number of Sequences: 5004
Number of extensions: 34589
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)