Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E03f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC065028-1|AAH65028.1|  380|Homo sapiens nucleoporin 43kDa protein.    52   1e-06
AL355312-1|CAH72860.1|  248|Homo sapiens nucleoporin 43kDa protein.    52   1e-06
AF514997-1|AAM76708.1|  380|Homo sapiens nucleoporin Nup43 protein.    52   1e-06
D87716-1|BAA13441.1|  459|Homo sapiens KIAA0007 protein.               30   4.3  
D26488-1|BAA05499.1|  686|Homo sapiens KIAA0007 protein.               30   4.3  

>BC065028-1|AAH65028.1|  380|Homo sapiens nucleoporin 43kDa protein.
          Length = 380

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
 Frame = +3

Query: 240 DIQGTFVSQKINKVRW--IPEDYAET-KCFLTGSWDDEVNLITVWT---FESVNEDEEVE 401
           +I   FVSQKI+K RW  +P    +T + F TGSWD+E N I++W+   F +++ D   E
Sbjct: 3   EIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDFGNLDSDGGFE 62

Query: 402 YP-RALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKI 509
              + L       DV  ++F ++ +I  + S G V +
Sbjct: 63  GDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTV 99


>AL355312-1|CAH72860.1|  248|Homo sapiens nucleoporin 43kDa protein.
          Length = 248

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
 Frame = +3

Query: 240 DIQGTFVSQKINKVRW--IPEDYAET-KCFLTGSWDDEVNLITVWT---FESVNEDEEVE 401
           +I   FVSQKI+K RW  +P    +T + F TGSWD+E N I++W+   F +++ D   E
Sbjct: 64  EIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDFGNLDSDGGFE 123

Query: 402 YP-RALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKI 509
              + L       DV  ++F ++ +I  + S G V +
Sbjct: 124 GDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTV 160


>AF514997-1|AAM76708.1|  380|Homo sapiens nucleoporin Nup43 protein.
          Length = 380

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
 Frame = +3

Query: 240 DIQGTFVSQKINKVRW--IPEDYAET-KCFLTGSWDDEVNLITVWT---FESVNEDEEVE 401
           +I   FVSQKI+K RW  +P    +T + F TGSWD+E N I++W+   F +++ D   E
Sbjct: 3   EIYAKFVSQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDFGNLDSDGGFE 62

Query: 402 YP-RALTKYPVDDDVTQIKFTEKNKIAVSISNGDVKI 509
              + L       DV  ++F ++ +I  + S G V +
Sbjct: 63  GDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTV 99


>D87716-1|BAA13441.1|  459|Homo sapiens KIAA0007 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 318 FLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKN-KIAVSISN 494
           FL+G+  D   L+ VW   S N+++       +T  PV  D+T  +  E+  K+AV   +
Sbjct: 81  FLSGAVHDR--LLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRD 138

Query: 495 GDVKILE 515
           G V + E
Sbjct: 139 GQVHLFE 145


>D26488-1|BAA05499.1|  686|Homo sapiens KIAA0007 protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 318 FLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKN-KIAVSISN 494
           FL+G+  D   L+ VW   S N+++       +T  PV  D+T  +  E+  K+AV   +
Sbjct: 245 FLSGAVHDR--LLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRD 302

Query: 495 GDVKILE 515
           G V + E
Sbjct: 303 GQVHLFE 309


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,530,379
Number of Sequences: 237096
Number of extensions: 1092290
Number of successful extensions: 1442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)