Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical...    30   1.2  
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    29   2.0  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    29   2.7  
Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine re...    27   8.1  

>AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical
           protein Y77E11A.16 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 255 FVSQKINKVRWIPEDY-AETKCFLTGSWDDEVNLITVW 365
           F  +++ K +W P DY A T  ++TGS+   +NLI ++
Sbjct: 2   FYLEEVAKQKWSPYDYAASTFWWITGSFAIPLNLILIY 39


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +3

Query: 249 GTFVSQKINK--VRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVEYPRALTK 422
           GT  S++I    ++  PE + +   +      +E N ++V + +  + DEE      LT 
Sbjct: 297 GTTASRQIRAPVIKTEPESFTQRSLYQPSVILNE-NPLSVGSVKQEDVDEETLLAEQLTT 355

Query: 423 YPVDDDVTQIKFTEKNKIAVSISNGDVK 506
             + + V Q++ TEK  +AVS    +V+
Sbjct: 356 --IQNSVGQVEVTEKQTVAVSSRKREVE 381


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
            protein 36 protein.
          Length = 1249

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 228  KMSIDIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVNLITVWTFESVNEDEEVE 401
            K S+ ++ +FV      + WI +D A   C+       E++    + FE V  +E  E
Sbjct: 1141 KCSVKMEASFVDGTNLVMVWITQDKASENCYDESECSMEISNQVPFGFEEVKNEETCE 1198


>Z79752-4|CAB02083.1| 1188|Caenorhabditis elegans Hypothetical
           protein D2005.4 protein.
          Length = 1188

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 252 TFVSQKINKVRWIPEDYAETKCFL-TGSWDDEVNLITVWTFE 374
           TF+++ +   R+        +CF+  G W D  N+++VW  E
Sbjct: 242 TFLTEVLKHARFCLGLACCERCFIHIGQWHDRRNILSVWGHE 283


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = +3

Query: 171 VCLFIFCCVLVHFMTHLYTKMSIDIQGTFVSQKINKVRWIPEDYAETKCFLTGSWDDEVN 350
           V +F+ CC  + F  ++Y  +    +    SQ +N+  ++PE   +++      +D E +
Sbjct: 359 VAIFL-CCNCLAFCNNIYENVQHVKKHASDSQSLNQTSFVPEIEEQSQ-----DYDGEWS 412

Query: 351 LITVWTFE 374
           +   W F+
Sbjct: 413 IFNEWNFD 420


>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 161 HEGSVFIYLLLCSCSFYDPFVYKNVNRY---SRNVCFSK 268
           H  ++   L+ C   F + + YK+ NRY   + N+CF+K
Sbjct: 44  HRSNIDDPLMWCILKFREFWRYKDRNRYTLAAHNICFTK 82


>AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical
           protein F56F11.2 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 369 FESVNEDEEVEYPRALTKYPVDDDVTQIKFTEKNK 473
           F+ VN + +V   R L K+P+DD+VT++ +   +K
Sbjct: 280 FDHVNREIQV---RLLAKFPLDDEVTRMFYLIASK 311


>AC006673-5|AAF39919.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein8 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 185 LLLCSCSFYDPFVYKNVNRYSRNVCF 262
           +L CSCSF +PF Y  V+    ++ F
Sbjct: 1   MLNCSCSFEEPFGYTIVHYICTSISF 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,934,886
Number of Sequences: 27780
Number of extensions: 190381
Number of successful extensions: 511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)