Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    29   0.32 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.9  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  

>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 167 KDTFSHTETVHLPLPSISTIFTTFAGNTELCV 262
           K+  S  ET+HL + S+  +  T +GN EL +
Sbjct: 179 KEGLSRDETIHLAVSSLLEVVQTASGNIELAI 210


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 41  AFVVLTVLSFFFIFLSYSNNFQCLF*N*PCCYCS 142
           A V+LT++SF  +FL     F C   +    +CS
Sbjct: 198 ADVLLTIISFLGVFLKNLRRFSCPILSYGAVFCS 231


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 210 PPYRLYLQHLLATLNYVSNVTYLSLN*LD 296
           PPY++  +     +N VSNV+  S+N +D
Sbjct: 132 PPYKVKKESCHTEINNVSNVSTESINVID 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,925
Number of Sequences: 5004
Number of extensions: 39104
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)