Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   2.5  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   3.3  

>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 28  EIEKLKHQSLNSSEVPNEDNMSTSTMSK 111
           EIEKL  +   S    + D  STS  SK
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSSTSNTSK 98


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +1

Query: 385 IEKIKAELHAISQQLASEIEAHKVTKENLEKAKRDVKKKNVL 510
           ++++K+ LH +      EI   +   +++ + K ++  +NVL
Sbjct: 19  LDELKSGLHTVQSVCMKEIGTAQQIIDDINEGKINMDDENVL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.302    0.120    0.294 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,577
Number of Sequences: 438
Number of extensions: 1662
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (20.9 bits)