Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.32 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    27   1.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   2.2  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   3.9  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   5.2  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   5.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.2  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   6.8  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   9.0  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   9.0  
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    25   9.0  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 341 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 484
           SS +  +S       S  ++   PT+ + T SS  +SSS PT+ SST+
Sbjct: 260 SSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 341 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTL 484
           SS S   S       S  TA    ++ +  +SS  +SSS PT+ SST+
Sbjct: 244 SSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSS-SSSSSPTSTSSTI 290



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 341 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSS 514
           SS S  +S P     +  ++    ++   T+S+  +SSS  ++ SSTL  + +   SS
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 288 SGYHNPRILA--DKKHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRS 461
           +G   PR +   D  H+ D  P  S  R+ +RT++  S  +L +RH       +   H++
Sbjct: 215 NGLTTPRPIGSDDLTHMYD--PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKT 272

Query: 462 PR 467
           PR
Sbjct: 273 PR 274


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +3

Query: 345 PTASQHRSLNRTIAADSPRFLVLRHATSLPHHAATVHRSPRPD 473
           P     R+ N+ + +  P+   +  A +  HH   +++  +PD
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPD 719


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 308 HSRR*KARH*QS----SHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGS 475
           H+++ K +H +S    S+ +P SQPQ      +++   P+A+      R++S S   T  
Sbjct: 244 HAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKIVSSPNPPSAKREKKKRRKSSMSSSITTP 303

Query: 476 STLGVTH 496
            T  V +
Sbjct: 304 PTAKVAN 310


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 341 SSHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSSTLGVTHLRRGSSA 517
           SS S P +       +  T++P P     T+S+  NSS  PTT +S    T +  G S+
Sbjct: 185 SSLSTPITPTVPPTSTSSTSIPIPPTS--TSSTDTNSSPLPTTSTSCTTSTSIPTGGSS 241



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 277 ASRTPATTIPAFSQIKSTSLTVVPQQASIAASTGPSQPTHRASWSYGTQL 426
           +S TP T+ P  +   +TS +V+     I +    S  + + SW+  T +
Sbjct: 576 SSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPI 625


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 274 SASRTPATTIPAFSQIKSTSLTVVPQQASIAASTGPSQPTHRAS 405
           S S+ P+  +PAF QI     +  PQ         P  P+  AS
Sbjct: 123 STSQPPSNHLPAFQQIPPIHQSAYPQNNVAEVLMPPIPPSVEAS 166


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 296 PQSPHSRR*KARH*QSSHSKP-ASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTG 472
           PQ+   RR   RH  + HS+  +SQ +    +       P +   T + RR ++    + 
Sbjct: 138 PQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSYHTPTKRRKNAVPRKSS 197

Query: 473 SSTLGVT 493
           S  L  T
Sbjct: 198 SPPLSST 204


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 344 SHSKPASQPQQDHRSRLTALPGPTARNFTASSRRNSSSQPTTGSS 478
           S  KPA+       + +T     T  N +  +  N+ S PTTG S
Sbjct: 227 SFGKPATTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFS 271


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/92 (21%), Positives = 40/92 (43%)
 Frame = +2

Query: 245 VNTQPSDSSSAHQELRLPQSPHSRR*KARH*QSSHSKPASQPQQDHRSRLTALPGPTARN 424
           V++    S+++      P S  +    +    SS S  +S       S  ++    ++ +
Sbjct: 127 VSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186

Query: 425 FTASSRRNSSSQPTTGSSTLGVTHLRRGSSAH 520
            ++SS  +SSS  ++ SS+  V      SS+H
Sbjct: 187 SSSSSSSSSSSSSSSSSSSSSVPITSSTSSSH 218


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 267 HLQRIKNS-GYHNPRILADKKHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSL 431
           H   +K+S G H  ++       I+    A  H++ NRT   DSP  +V    T L
Sbjct: 300 HYTNVKDSQGSHQTKV------TIEENMEAPSHQAANRTTLTDSPLGIVEDETTIL 349


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 348 TASQHRS-LNRTIAADSPRFLVLRHATSLPHHAATVHRSP 464
           T S+  S LN  +  ++ +++   + +S  HH   +H+SP
Sbjct: 31  TFSKRNSILNNQVCFEAIKYIQRHYFSSQSHHVTYLHQSP 70


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 263 DSSSAHQELRL-PQSPHSRR*KARH*QSSHSKPASQPQQDHRSRLTALP 406
           DS S+   L + PQ+P  R  ++RH  S+ +    +       ++T LP
Sbjct: 260 DSESSEDNLTIQPQTPRRRHKRSRHNSSNLASTPKRNGYKQPLQITPLP 308


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 390 DSPRFLVLRHATSLPHHAATV 452
           +SP FL+L+H   LP  A ++
Sbjct: 34  ESPNFLILQHNNLLPREAKSL 54


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 411 LRHATSLPHHAATVHRSP 464
           L+ A S PH A+TV RSP
Sbjct: 743 LKQALSRPHTASTVVRSP 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,558
Number of Sequences: 5004
Number of extensions: 47568
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)