Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    29   0.56 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    28   0.97 
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    27   1.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.2  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   3.0  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   3.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   3.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   3.9  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   5.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   5.2  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   5.2  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.0  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 435 LPLNSFALIDGFVGVLFAVCSLSLVILTNKVRRNITKFVGGAFEINIVQLASWNLI 268
           +PL   + + G VG+  +    S++ LTN ++ N+   +  A    +  L SW ++
Sbjct: 7   IPLALASSLSGVVGIASSFLVTSVLSLTNSIQSNVGAVISYAVLYFVNSLLSWCML 62


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 350 FVKMTSDKEQTANKTPTKPSMRAKLLSGKSQSFDEISPVTVADIHIAKSKISK 508
           F    S K + + K+P+ P          S S D  S V+ AD+ +  S   K
Sbjct: 149 FENSISQKNEFSQKSPSVPLSPVSTFPASSISLDASSDVSAADVSVGGSSTIK 201


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 228 SMFSKSLWLKVKQVLSSRKLIVQYLFQMHLLQIW*CFFELYLLR*PVIKSKQQIKLQ 398
           S  ++ +W  +  V+ S   I+ + F +H+L IW     LYL R  V KS   ++LQ
Sbjct: 403 STLNEIIWPIISFVILSS--IIVHGFSIHVLVIWGKLKSLYLNR-KVTKSDSDLELQ 456


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 362 TSDKEQTANKTPTKPSMRAKLLSGKSQSFDEISPVTVADIHIAKSKISK 508
           TSD +    KTP KPS+  K+ S  ++   +++      +    S+++K
Sbjct: 262 TSDIQDRKIKTPIKPSLLGKIRSSVNKGMTDVASQVNRGMTDVASQVNK 310


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 507 FEILLFAI*MSATVTGLISSKDWDLP 430
           FE+++  +    T  G+++S +WD+P
Sbjct: 109 FEVVMSRLTSGPTYFGVVNSSEWDIP 134


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 258 VKQVLSSRKLIVQYLFQMHLLQIW*CFFELYLL 356
           +++V+ S + I Q LF M  L +W CF    +L
Sbjct: 192 IQRVVFSERPIPQSLFLMIFLTLWNCFIPYSIL 224


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -2

Query: 253 SHKLFENIETFKSQFSRGMFFGCHF*KHFAKFVPD*SKRSRLVMNFPRNRTLSGSPFHCY 74
           S  +F+++ + + Q +R   FG  F +  A F+P   +   L+ N  R + L+ S    Y
Sbjct: 2   SQDVFKHLTSKQVQRTRARSFGASFERPLASFLPK-KENKNLLSNAARVKLLTFSSSSPY 60

Query: 73  S 71
           S
Sbjct: 61  S 61


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 290 CTIFISNAPPTNLVMFLRTLFVKMTSDKEQTANKTPT 400
           C ++ S  P  NLV F      K  +++  TAN TPT
Sbjct: 461 CVVYYSITPLRNLVGFTTKRSGKNLANRFFTANFTPT 497


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 458 LFHQKIGIYHLTALPSLTVLLEFYLLFALYHWSS*QIKFEETLP 327
           LF + I + +   L + T +L  Y  F+L  W S QIK   ++P
Sbjct: 130 LFARNIRVQNALGLGAGTRMLTPYERFSLIQWVSFQIKSSFSIP 173


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 365 SDKEQTANKTPTKPSMRAKLLSGKSQSFDEISPVT 469
           S+    A++  + P +  KLL  +SQ FDE   VT
Sbjct: 490 SESVVVASEKASSPDLSPKLLPSESQIFDEGIAVT 524


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 303 INIVQLASWNLILALPSAINFLKTLKLLRA 214
           +N+++    N+   +P+A+ ++KTL  LRA
Sbjct: 67  VNLLKEEQENISYRVPNAVPYIKTLVTLRA 96


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 429 LNSFALIDGFVGVLFAVCSL 370
           LNS+ L+  FV VLF VC +
Sbjct: 292 LNSYFLLKFFVRVLFGVCMI 311


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 288 LASWNLILALPSAINFLKTLKLLRANLV 205
           L + NL L+LPSAIN L  + +L  +LV
Sbjct: 49  LFNGNLGLSLPSAINILTLIIVLYFSLV 76


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -3

Query: 240  LKTLKLLRANLVAACFSDVTSKNISRNSFLISLSE 136
            LK LKLLR+NL+A   S V+S     +S L+S+++
Sbjct: 1122 LKDLKLLRSNLMAIDDSRVSS--YFTDSVLLSMAK 1154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,417
Number of Sequences: 5004
Number of extensions: 43687
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)