Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330D04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0092 + 19973364-19975983,19976272-19976648 31 0.74
09_04_0524 + 18321110-18323978,18324098-18324576 30 0.98
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 29 1.7
12_02_0124 + 13935314-13935420,13935605-13935986 29 3.0
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018 29 3.0
02_01_0405 - 2952434-2955583 29 3.0
08_02_1110 + 24371934-24374763,24375034-24375518 28 5.2
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 27 9.1
10_08_0331 - 16831646-16834756 27 9.1
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 27 9.1
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 27 9.1
02_01_0404 - 2945611-2948802 27 9.1
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272... 27 9.1
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -3
Query: 372 LSLVILTNKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKLL 220
+SL I NK+ ++ + +G + + LA+ +L +LPS+ + LK L+ L
Sbjct: 353 VSLSIRDNKISGSLPRDIGNLVNLQYLSLANNSLTGSLPSSFSKLKNLRRL 403
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 30.3 bits (65), Expect = 0.98
Identities = 20/77 (25%), Positives = 41/77 (53%)
Frame = -3
Query: 366 LVILTNKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKLLRANLVAACFSD 187
L + N++ I +GG +N + ++ +L+ A+PSAI+ +L+ L +L + S
Sbjct: 474 LRLSVNRLSGTIPAEIGGLKSLNFLDISDNHLVGAVPSAISGCSSLEFL--DLHSNALSG 531
Query: 186 VTSKNISRNSFLISLSE 136
+ + R+ LI +S+
Sbjct: 532 SLPETLPRSLQLIDVSD 548
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 471 TVTGLISSKDWDLPLNSFALIDGFVGVLFAVCSLSLVILT-NKVRRNITKFVGGAFEINI 295
T+ L + L +N+F G + C L ++ L NK+ NI K + + +
Sbjct: 390 TLGNLTQLSELYLSMNAFT---GEIPSALGKCPLGVLALAYNKLSGNIPKEIFSSSRLRS 446
Query: 294 VQLASWNLILALPSAINFLKTLK 226
+ L S L+ +PS + LK L+
Sbjct: 447 ISLLSNMLVGPMPSELGLLKNLQ 469
>12_02_0124 + 13935314-13935420,13935605-13935986
Length = 162
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 323 NLVMFLRTLFVKMTSDKEQTANKTPTKPSMRAK 421
NL+ F++ VK S NKTP K ++ K
Sbjct: 97 NLIAFMKNFLVKEASMSRPCPNKTPVKTGVQVK 129
>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
Length = 1040
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 396 GVLFAVCSLSLVI--LTNKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKL 223
G +F++ SLS V+ N+ ++ VGG ++ + + + L ALP AI+ ++L
Sbjct: 489 GEIFSLSSLSFVLDLSRNQFSSSLPSEVGGLTKLTYLYMHNNKLAGALPDAISSCQSLME 548
Query: 222 LR 217
LR
Sbjct: 549 LR 550
>02_01_0405 - 2952434-2955583
Length = 1049
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -3
Query: 438 DLPLNSFA-LIDGFVGVLFAVCSLSLVILTNKVRRNITKFVGGAFEINIVQLASWNLILA 262
+L N F LI +G+L + SL+L NK+ +I + + ++ ++ L+S NL
Sbjct: 561 NLGKNEFTGLIPPEIGLLKVLLSLNLSF--NKLYGDIPQSICNLTDLLVLDLSSNNLTGT 618
Query: 261 LPSAINFLKTL 229
+P+A+N L L
Sbjct: 619 IPAALNNLNFL 629
>08_02_1110 + 24371934-24374763,24375034-24375518
Length = 1104
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 369 SLVILTNKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKLLRA 214
SL + +N +R I +G + + L L A+P++I LK L++LRA
Sbjct: 155 SLALNSNSLRGAIPDAIGNLTGLTSLTLYDNELSGAIPASIGNLKKLQVLRA 206
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 375 SLSLVILT-NKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKLLRA 214
SLS + L NK+ +I K +G + + L + N +LPS++ L+ L +L A
Sbjct: 389 SLSFLALDLNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLRNLGILVA 443
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -3
Query: 366 LVILTNKVRRNITKFVGGAFEINIVQLASWNLILALP---SAINFLKTLKLLRANLVA 202
L+I N + + +F+G ++ I++L L A+P + L+ LK+ A LV+
Sbjct: 273 LLIAANNLTGGVPEFLGSMSQLRILELGDNQLGGAIPPVLGQLQMLQRLKIKNAGLVS 330
>06_03_0924 -
25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 27.1 bits (57), Expect = 9.1
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Frame = +2
Query: 239 KKFMAEGKASIKFQEANCTIFISNAPPTNLVMFLRTLFVKMTSDKEQT--------ANKT 394
K + E K + +FQ C S+ P T +VM L VK + E+T + K
Sbjct: 614 KWYPHENKLTARFQGDEC----SHGPMTAIVMTLGGKGVKFLVNAEETPLSVKSKASKKL 669
Query: 395 PTKPSMRAKLLSGKSQSFDEIS 460
KPS + KL + D+IS
Sbjct: 670 EFKPSEKIKLFCSGKELQDDIS 691
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -3
Query: 372 LSLVILTNKVRRNITKFVGGAFEINIVQLASWNLILALPSAINFLKTLKLLRANLVAACF 193
+ L + TN++ +I + +G + + L++ +I +PS F K + L+ L +
Sbjct: 305 IKLYLSTNEITGSIPESIGNLTSLQNMDLSNNRIIGPIPS--TFSKLISLITLKLESNVL 362
Query: 192 SDVTSKNIS--RNSFLISLS 139
+ + + RN F++ LS
Sbjct: 363 NAILPPELGFLRNLFVLDLS 382
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = -3
Query: 438 DLPLNSFA-LIDGFVGVLFAVCSLSLVILTNKVRRNITKFVGGAFEINIVQLASWNLILA 262
+L N+F+ +I +G L ++ LSL +N + I + +G + ++ L+S +L A
Sbjct: 569 NLSNNNFSGVIPQDIGQLKSLDILSLS--SNNLSGEIPQQLGNLTNLQVLDLSSNHLTGA 626
Query: 261 LPSAINFLKTL 229
+PSA+N L L
Sbjct: 627 IPSALNNLHFL 637
>01_01_0339 +
2720647-2720790,2721241-2721282,2721580-2721761,
2721828-2721939,2722814-2722867,2723077-2723115,
2723116-2723186,2723313-2723394,2723493-2723589,
2723727-2723797
Length = 297
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 38 VMEAGESFLSCAVTVEWTTTQGSISRKIHYKTASLRLIRNEF 163
+ME L + + W+ T+ S KI+Y SL++IR F
Sbjct: 158 IMETHSHILVTPLIISWSITESITSWKIYYN--SLQVIRYSF 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,171
Number of Sequences: 37544
Number of extensions: 231706
Number of successful extensions: 571
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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