Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z77660-3|CAB01171.1|  471|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine rec...    28   3.5  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    28   3.5  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z81038-14|CAI79153.1|  696|Caenorhabditis elegans Hypothetical
           protein C25A1.10b protein.
          Length = 696

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +2

Query: 362 TSDKEQTANKTPTKPS----MRAKLLSGKSQSFDEISPVTVADIHIAKSKISK 508
           +SD E  A KTP KP+    +  K+ S    S DE  P     + +    ++K
Sbjct: 377 SSDDEAPAKKTPVKPTPVKIVAKKVDSSSDSSDDEKKPTKATPVKVTPKSVTK 429


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +2

Query: 362 TSDKEQTANKTPTKPS----MRAKLLSGKSQSFDEISPVTVADIHIAKSKISK 508
           +SD E  A KTP KP+    +  K+ S    S DE  P     + +    ++K
Sbjct: 652 SSDDEAPAKKTPVKPTPVKIVAKKVDSSSDSSDDEKKPTKATPVKVTPKSVTK 704


>Z77660-3|CAB01171.1|  471|Caenorhabditis elegans Hypothetical
           protein F38H4.3 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 305 SNAPPTNLVMFLRTLFVKMTSDKEQTANKTPTKPS 409
           +++PPTN V+      V    +K QT+ K P KPS
Sbjct: 98  TSSPPTNNVISAAKRSVDDDVEKPQTSQKPPQKPS 132


>U13019-15|AAK84567.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 5 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 473 QL*LGLFHQKIGIYHLTALPSLTVLLEFYLLF 378
           QL L LF Q++ IY     PSL  L E Y+LF
Sbjct: 70  QLILDLFIQRVIIYIPQLCPSLYPLFEHYVLF 101


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 274 LNTCFTFSHKLFENIETFK 218
           +  C TF HKLFE++  FK
Sbjct: 243 ITECTTFKHKLFESLSKFK 261


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 477  SATVTGLISSKDWDLPLNSFALIDGFVGVLFAVCSLSLVILTNKVRR 337
            SAT +   SS + D+PLN+  LI G VG+L  +  L+L+I    V R
Sbjct: 2205 SATSSESTSSSNSDIPLNTLILI-GVVGLLI-IALLALLIYVCCVSR 2249


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +2

Query: 101 GSISRKIHYKTASLRLIRNEFREMFLEVTS-EKHAATKLALKSFNVFKKFMAEGKASIKF 277
           G ++  +  +  + R+++ E  +   E+ S  K    KL  +   + K+ + +GK   + 
Sbjct: 223 GRLNDLLTSEKQNTRVLQEEVAKFKAELESTNKTMKQKLVHERKTLIKEKLEQGKEITRL 282

Query: 278 QEANCTIFISNAPPTNLVMFLRTLFVKMTSDKEQTANK 391
            EAN  + I N    NL+  L       TS+ +  + K
Sbjct: 283 LEANAHLSIQNEEQKNLIQNLLDQQQTSTSNAKWCSKK 320


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 234 FSKSLWLKVKQVLSSRKLIVQYLFQMHLLQIW*CFFELYLLR 359
           FS  L + V +     ++ V Y++QM    I  CF EL ++R
Sbjct: 19  FSLLLLVSVYRYKQKDRIPVVYIYQMTACSIGVCFVELQIIR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,129
Number of Sequences: 27780
Number of extensions: 234393
Number of successful extensions: 550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)