Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.36 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 308 NAPPTNLVMFLRTLFVKMTS-DKEQTANKTPTKPSMRAKLLSGKS-QSFDEISPVTVADI 481
           N    N+  ++  +  K    D+    N+  T+  ++A L   ++ Q   E SP++ A++
Sbjct: 53  NVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQLIVECSPISDANV 112

Query: 482 HIAKSKI 502
           HI  SKI
Sbjct: 113 HIKISKI 119


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  SFLSCAVTVEWTTTQGSISRKIHYKTASLRLIRNE 160
           S+   A+T  W   +G++ +     + +  LI+N+
Sbjct: 208 SYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQ 242


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  SFLSCAVTVEWTTTQGSISRKIHYKTASLRLIRNE 160
           S+   A+T  W   +G++ +     + +  LI+N+
Sbjct: 208 SYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQ 242


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  SFLSCAVTVEWTTTQGSISRKIHYKTASLRLIRNE 160
           S+   A+T  W   +G++ +     + +  LI+N+
Sbjct: 259 SYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQ 293


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  SFLSCAVTVEWTTTQGSISRKIHYKTASLRLIRNE 160
           S+   A+T  W   +G++ +     + +  LI+N+
Sbjct: 208 SYEQTAITYVWKNDEGTLRKSPSLTSLNAYLIKNQ 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,507
Number of Sequences: 438
Number of extensions: 2658
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)