Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   120   2e-28
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   116   2e-27
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   6.8  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   9.0  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   9.0  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  120 bits (288), Expect = 2e-28
 Identities = 68/140 (48%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
 Frame = -3

Query: 519 KEGVMVAKKDXHAPKHXELEKIPXLQVIKAMQSLKSRGYVKEQFAWRHFXWYLTNEGIEY 340
           ++GV+VAKKD + PKH E+  +P LQVIKA QSL SRGY+K ++ W  F + LTNEG+EY
Sbjct: 17  QQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEY 75

Query: 339 LRIFLHLPPEIVPATLKRSVRTETVXRGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDK 160
           LR +LHLP E+VPAT KR VR         GRP+   RS+     YRR          +K
Sbjct: 76  LREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EK 123

Query: 159 KAD-VGPGSADLEFKGGYGR 103
           K D   PG     F+GG+GR
Sbjct: 124 KDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  116 bits (279), Expect = 2e-27
 Identities = 67/138 (48%), Positives = 84/138 (60%)
 Frame = -3

Query: 516 EGVMVAKKDXHAPKHXELEKIPXLQVIKAMQSLKSRGYVKEQFAWRHFXWYLTNEGIEYL 337
           +GV+VAKKD + PKH E+  +P LQVIKA QSL SRGY+K ++ W  F + LTNEG+EYL
Sbjct: 18  QGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYL 76

Query: 336 RIFLHLPPEIVPATLKRSVRTETVXRGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKK 157
           R +LHLP E+VPAT KR VR  T  R   GRP+   R++ D   YRR           K 
Sbjct: 77  REYLHLPAEVVPATHKRQVR-PTAPR--AGRPEPRERASAD-AGYRRA--------EKKD 124

Query: 156 ADVGPGSADLEFKGGYGR 103
               P      F+GG+GR
Sbjct: 125 EGAAPSGFAPSFRGGFGR 142


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 287 RLSVAGTISGGRCKNILKY 343
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 348 IEYLRIFLHLPPEIVPATLKRSVRTETVXRGPVGR 244
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 243 PDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSAD 130
           P+A   S+    +Y +  A+    P    +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,983
Number of Sequences: 5004
Number of extensions: 26082
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)