Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330D01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   116   1e-26
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical pr...    29   2.0  
V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein ( Caeno...    29   2.0  
J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein ( C.ele...    29   2.0  
AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen stru...    29   2.0  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   6.2  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  116 bits (278), Expect = 1e-26
 Identities = 66/141 (46%), Positives = 82/141 (58%)
 Frame = -3

Query: 516 EGVMVAKKDXHAPKHXELEKIPXLQVIKAMQSLKSRGYVKEQFAWRHFXWYLTNEGIEYL 337
           EGV VAKKD +A  H  +E +  L+VIK ++SL SR  VKEQFAWRH+ WYLT+ GI YL
Sbjct: 18  EGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYL 77

Query: 336 RIFLHLPPEIVPATLKRSVRTETVXRGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKK 157
           R +L LP EIVPAT+K   R   V       P A      DR AYR           +K 
Sbjct: 78  REYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDREAYRT----------EKV 126

Query: 156 ADVGPGSADLEFKGGYGRGRP 94
            + GPG A + ++ G+GRG P
Sbjct: 127 TEAGPGGAPV-YRAGFGRGAP 146


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAP 169
           G V RP APAR A      R  PAAP   P
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAPANVP 62


>Z68301-5|CAA92620.1|  301|Caenorhabditis elegans Hypothetical
           protein W01B6.7 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 91
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>V00148-1|CAA23464.1|  301|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-2 coding for a collagen.
           ).
          Length = 301

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 91
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>J01048-1|AAA27990.1|  301|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 2 (col-2) gene, complete
           cds. ).
          Length = 301

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 91
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>AY347575-1|AAP97869.1|  301|Caenorhabditis elegans COLlagen
           structural gene, probabledorsal and ventral cuticle
           component, from embryo to adult,but maximal in dauer
           (28.0 kD) (col-2) protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 91
           GP G P +PA  +    A    PA P        A  GPG      +GG G   PA
Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 246 RPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLE 124
           + D+ + S++D    ++TPA     P  KKA+    S+D E
Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 246 RPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFK 118
           + D+ + S++D    ++TPA     P  KKA+    S+D E K
Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321


>Z79694-6|CAB01958.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.6 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 261 RGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 94
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206


>Z79694-5|CAB01961.1|  316|Caenorhabditis elegans Hypothetical
           protein C15A11.5 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 261 RGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 94
           +GP G P APA+           PA    +P    A   PGS      G  GRG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = -3

Query: 261 RGPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 91
           +GP G+P  P +      A  R PA    AP    A   PG A    +  +G   P+
Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208


>Z68335-1|CAA92729.1|  299|Caenorhabditis elegans Hypothetical
           protein C29F4.1 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGS 136
           GP G+P AP +   D       P  P   P    AD  PG+
Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 453 PXLQVIKAMQSLKSRGYVKEQFAWRHFXWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 283
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 100
           GP G P AP    E      R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = -3

Query: 258 GPVGRPDAPARSAEDRXAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 100
           GP G P AP    E      R+ ++PG  P       GP   D    GG G G
Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,172,934
Number of Sequences: 27780
Number of extensions: 164280
Number of successful extensions: 572
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)