Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    99   3e-22
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    55   7e-09
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   5.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   6.8  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   9.0  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 99.1 bits (236), Expect = 3e-22
 Identities = 49/75 (65%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
 Frame = -2

Query: 520 GKEYLMRAHFGLPSVECEE--VDGKPPIQVKFEIPYFTTSGIQVRYLKIIE-KSGYQALP 350
           GKE+ MRA  GLPSV+ E+  V  K P+Q+KF IPYFTTSGIQVRYLKI E K  Y A+P
Sbjct: 351 GKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNYHAMP 410

Query: 349 WVRYITQNG-DYQLR 308
           WVRY+TQNG +Y +R
Sbjct: 411 WVRYVTQNGTEYSIR 425


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = -2

Query: 514 EYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG--YQALPWVR 341
           E +  A   L +   +++  KPPI + F I  FT+SG+ V+YL++ E S   Y+++ WVR
Sbjct: 375 ELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEPSNSKYKSIKWVR 434

Query: 340 YITQNGDYQLR 308
           Y T+ G  ++R
Sbjct: 435 YSTRAGTCEIR 445


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 439 LELGAFHQLPHIQQKADQSE 498
           L +  FH++PHIQQ   QS+
Sbjct: 108 LNMYGFHKVPHIQQGVLQSD 127


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 407 WNSSKISENY*EKWIPSPTLG 345
           WNS + S  Y   W+P P  G
Sbjct: 125 WNSGERSTEYVPVWLPGPEKG 145


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 448 PIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDY 317
           P+ V     YF   G        + K+GY A    ++ T +GDY
Sbjct: 297 PLSVTDNANYFQWEGKGTSAQYYVNKAGYTAEQGCQWGTSSGDY 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,401
Number of Sequences: 5004
Number of extensions: 38873
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)