Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...   114   5e-26
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...   113   1e-25
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    74   8e-14
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886...    50   1e-06
08_02_0635 + 19551869-19551996,19553131-19553233                       30   1.3  
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562...    28   5.2  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    27   9.1  

>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score =  114 bits (274), Expect = 5e-26
 Identities = 53/73 (72%), Positives = 60/73 (82%), Gaps = 2/73 (2%)
 Frame = -2

Query: 520 GKEYLMRAHFGLPSVECEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 347
           GK+Y+ RA F LPS+  EE   + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPW
Sbjct: 355 GKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPW 414

Query: 346 VRYITQNGDYQLR 308
           VRYIT  G+Y+LR
Sbjct: 415 VRYITMAGEYELR 427


>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score =  113 bits (271), Expect = 1e-25
 Identities = 53/73 (72%), Positives = 60/73 (82%), Gaps = 2/73 (2%)
 Frame = -2

Query: 520 GKEYLMRAHFGLPSVECEE--VDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPW 347
           GKEY+ RA F LPS+  E+   + K PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPW
Sbjct: 330 GKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPW 389

Query: 346 VRYITQNGDYQLR 308
           VRYIT  G+Y+LR
Sbjct: 390 VRYITMAGEYELR 402


>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 28/49 (57%), Positives = 41/49 (83%)
 Frame = -2

Query: 454 KPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 308
           +PPIQ++F++P FT SG++VR+LK+ EKSGY  + WVRYIT+ G Y++R
Sbjct: 389 RPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITRAGSYEIR 437


>07_03_1297 +
           25587445-25587502,25587646-25587740,25588426-25588629,
           25588843-25588959,25589084-25589212,25589591-25589717,
           25590174-25590277,25590369-25590473,25590969-25591190,
           25591869-25591967
          Length = 419

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -2

Query: 448 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 308
           P+ + F IP + TS +QVRYL+I +KS  Y    WVRY+TQ   Y  R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418


>08_02_0635 + 19551869-19551996,19553131-19553233
          Length = 76

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 283 WSFNRNCISHKNFIYAKIII 224
           WSFN+ C+   NFI+ ++II
Sbjct: 42  WSFNKICLQRTNFIHLQLII 61


>04_04_1223 +
           31851545-31852609,31854314-31854773,31856201-31856250,
           31856333-31856463,31856569-31856665,31856759-31856950,
           31857121-31857123
          Length = 665

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 520 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALP 350
           GKE L+RA + L S+   +    P         YFT +      LK +EKS   + P
Sbjct: 78  GKERLVRAKYSL-SLVARDGRASPLAGDTLRSHYFTPTSRSADVLKFVEKSNLSSSP 133


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 389 ISYLN-SRSCEIWYFKFYLNWGLSI 460
           ++Y+N +R  ++W F F+  WGL +
Sbjct: 217 VAYMNLTRGSKLWRFPFWFFWGLLV 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,438
Number of Sequences: 37544
Number of extensions: 203253
Number of successful extensions: 290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)