Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 131 3e-31
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 130 6e-31
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 129 1e-30
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 109 2e-24
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 50 8e-07
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 50 8e-07
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 50 8e-07
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 38 0.006
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF068713-11|AAC17792.1| 315|Caenorhabditis elegans Serpentine r... 27 8.1
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 131 bits (317), Expect = 3e-31
Identities = 58/71 (81%), Positives = 65/71 (91%)
Frame = -2
Query: 520 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVR 341
GKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVR
Sbjct: 350 GKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVR 409
Query: 340 YITQNGDYQLR 308
YITQNG+Y++R
Sbjct: 410 YITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 130 bits (314), Expect = 6e-31
Identities = 55/71 (77%), Positives = 66/71 (92%)
Frame = -2
Query: 520 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVR 341
G+EY+MR+ F LPS+ EE++G+PPI VKFEIPY+TTSG+QVRYLKIIEKSGYQALPWVR
Sbjct: 354 GREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLKIIEKSGYQALPWVR 413
Query: 340 YITQNGDYQLR 308
Y+TQNGDYQ+R
Sbjct: 414 YVTQNGDYQMR 424
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 129 bits (312), Expect = 1e-30
Identities = 57/71 (80%), Positives = 64/71 (90%)
Frame = -2
Query: 520 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVR 341
GKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEK GYQALPWVR
Sbjct: 350 GKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKRGYQALPWVR 409
Query: 340 YITQNGDYQLR 308
YITQNG+Y++R
Sbjct: 410 YITQNGEYEMR 420
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 109 bits (261), Expect = 2e-24
Identities = 47/54 (87%), Positives = 53/54 (98%)
Frame = -2
Query: 469 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 308
EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNG+Y++R
Sbjct: 3 EESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMR 56
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 50.4 bits (115), Expect = 8e-07
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Frame = -2
Query: 454 KPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 308
+PP+ + FE+P F SG++VRYLK+ E S + + WVRYI ++G Y+ R
Sbjct: 389 RPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 50.4 bits (115), Expect = 8e-07
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Frame = -2
Query: 454 KPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 308
+PP+ + FE+P F SG++VRYLK+ E S + + WVRYI ++G Y+ R
Sbjct: 383 RPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 434
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 50.4 bits (115), Expect = 8e-07
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Frame = -2
Query: 454 KPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 308
+PP+ + FE+P F SG++VRYLK+ E S + + WVRYI ++G Y+ R
Sbjct: 389 RPPVSMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 37.5 bits (83), Expect = 0.006
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -2
Query: 490 GLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQL 311
G +V V PPI +KF+I SG++V L + + Y+ V+YIT+ G + +
Sbjct: 354 GSVAVSGTTVAENPPISLKFKINQLVLSGLKVNRLDMYGEK-YKPFKGVKYITKAGKFTI 412
Query: 310 RT 305
RT
Sbjct: 413 RT 414
>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 365 STFLNNFQISYLNSRSCEIWYFKFYL 442
ST L + + YL++R E+WYFK Y+
Sbjct: 2826 STDLTRYVLGYLHNR--ELWYFKKYI 2849
>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 365 STFLNNFQISYLNSRSCEIWYFKFYL 442
ST L + + YL++R E+WYFK Y+
Sbjct: 2823 STDLTRYVLGYLHNR--ELWYFKKYI 2846
>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical protein
T24B8.7b protein.
Length = 2923
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 365 STFLNNFQISYLNSRSCEIWYFKFYL 442
ST L + + YL++R E+WYFK Y+
Sbjct: 2826 STDLTRYVLGYLHNR--ELWYFKKYI 2849
>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical protein
T24B8.7a protein.
Length = 2920
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 365 STFLNNFQISYLNSRSCEIWYFKFYL 442
ST L + + YL++R E+WYFK Y+
Sbjct: 2823 STDLTRYVLGYLHNR--ELWYFKKYI 2846
>Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical
protein T13H10.2 protein.
Length = 468
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Frame = -2
Query: 427 IPYFTTSGIQVRYLKIIEKSGY---QALPWV----RYITQNGDYQLRTN*KVHSIWSFNR 269
IPY +G ++L++ EK+G+ A P + R+ ++N +Y L+ K+ + +
Sbjct: 210 IPYEELTGELYKFLRVFEKTGHVRLTAFPMIRHQPRFDSENENYHLKMI-KLKTDLTHLH 268
Query: 268 NCISHKNFIYAK-IIIQNKIELI 203
+ HKN AK +I QN E++
Sbjct: 269 CWLMHKN--RAKFMIFQNSAEIV 289
>Z81583-5|CAB04673.1| 574|Caenorhabditis elegans Hypothetical
protein T02G6.5 protein.
Length = 574
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 141 DRSVTNVKIMLT*KKLSCRAPLDVRCTFQFQFNKIIYFN 25
D S+ N ++ + +++ L + C F FNK I FN
Sbjct: 411 DFSLRNDEVNILLDRINLSGKLSIECMFSSSFNKEILFN 449
>Z72514-5|CAA96679.5| 818|Caenorhabditis elegans Hypothetical
protein T10B10.7 protein.
Length = 818
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 418 FTTSGIQVRYLKIIEKSGYQAL-PWVRYITQNGDYQL 311
F +S + ++++ G L PW++Y +GDY +
Sbjct: 3 FNSSDVPSTLYSLVDEQGGGILSPWIKYARSSGDYSI 39
>AF068713-11|AAC17792.1| 315|Caenorhabditis elegans Serpentine
receptor, class i protein21 protein.
Length = 315
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 359 LVSTFLNNFQISYLNSRSCEIWYFKFYLNW 448
++S F+N I + S+S I F++YL W
Sbjct: 22 IISVFINTLGIYLIKSQSGAIDSFRYYLLW 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,412
Number of Sequences: 27780
Number of extensions: 206256
Number of successful extensions: 435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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