Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   3.3  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   3.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   3.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -2

Query: 517 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 338
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 337 ITQNG 323
           +T NG
Sbjct: 312 MTNNG 316


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -2

Query: 517 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 338
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 337 ITQNG 323
           +T NG
Sbjct: 312 MTNNG 316


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -2

Query: 517 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 338
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 337 ITQNG 323
           +T NG
Sbjct: 312 MTNNG 316


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 514 EYLMRAHFGLPSVECEE 464
           EY +R HFG    +CE+
Sbjct: 5   EYHLRNHFGSKPFKCEK 21


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 463 VDGKPPIQVKFEIPYFTTSGIQVRYLK 383
           +D KP I V  E  Y  T   +  YL+
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAYKQHYLQ 120


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 463 VDGKPPIQVKFEIPYFTTSGIQVRYLK 383
           +D KP I V  E  Y  T   +  YL+
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAYKQHYLQ 120


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 469 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQ 359
           ++VD + P+  +    Y    G QV    + +++G+Q
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 108  SALFLH*SQTYLVLGETVWKQTSSTIMVQTYQINSI 215
            +A FL  + T LVL   VW      I+  T Q   I
Sbjct: 1504 AATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRPI 1539


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 108  SALFLH*SQTYLVLGETVWKQTSSTIMVQTYQINSI 215
            +A FL  + T LVL   VW      I+  T Q   I
Sbjct: 1500 AATFLSPNSTTLVLRLHVWPDNGCPILYFTIQYRPI 1535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,329
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)