Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330C10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical pr...   128   2e-30
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    29   2.0  
AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z49886-4|CAA90053.1|  137|Caenorhabditis elegans Hypothetical
           protein C06A1.5 protein.
          Length = 137

 Score =  128 bits (309), Expect = 2e-30
 Identities = 61/81 (75%), Positives = 68/81 (83%)
 Frame = +2

Query: 269 GGGVDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKI 448
           G  V  S+ +TT +MTKYERARVLGTRALQIAM APVMVELEGETDPL+IA KELK  +I
Sbjct: 52  GKAVPTSEHVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRI 111

Query: 449 PIIIRRYLPDHSYEDWSIDEL 511
           PII+RRYLPD SYEDW  D+L
Sbjct: 112 PIIVRRYLPDGSYEDWPTDQL 132


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 132 WQMRSTKPMMVVQIMTTLQKKMITLKKQKNRKKMAIMCNVW 254
           WQ+   +  M V +++ +    I  K Q   +K  ++C +W
Sbjct: 196 WQLTYMQISMAVTLLSNIVTGAILWKSQNQSRKSRLLCRIW 236


>AL132865-19|CAJ76951.1|  220|Caenorhabditis elegans Hypothetical
           protein Y62E10A.20 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 98  NLFKQRFYSYCYEQRINTE 42
           NLF Q FY+ CYE+    E
Sbjct: 58  NLFAQSFYTLCYEKSFTVE 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,540
Number of Sequences: 27780
Number of extensions: 169898
Number of successful extensions: 413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)