Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330C09f
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 143 8e-36
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 143 1e-35
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 29 0.37
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 2.0
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 3.5
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.6
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 4.6
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 6.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 6.1
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 6.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 6.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.1
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 8.0
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 8.0
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 24 8.0
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 143 bits (347), Expect = 8e-36
Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Frame = +1
Query: 1 MPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKE 180
MPHK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK
Sbjct: 52 MPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKA 111
Query: 181 NERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 315
NE KEAKA GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 112 NEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 143 bits (346), Expect = 1e-35
Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Frame = +1
Query: 1 MPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKE 180
MPHK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK
Sbjct: 52 MPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKA 111
Query: 181 NERLLKEAKAAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 315
NE KEAKA GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 112 NEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.7 bits (61), Expect = 0.37
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -2
Query: 288 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 124
GF S+T SF+G W+ L + + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 123 TDIDALRYN 97
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 2.0
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 219 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 55
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 114 DALRYNPSANTLVDNHTES 58
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 4.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 145 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 240
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 4.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 199 EAKAAGKTVNLKRQPAPPKAAHIVSGT 279
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 4.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 107 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 286
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 287 P 289
P
Sbjct: 115 P 115
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 219 LAGSLGFLQ*PLILFDSLKEVLSALGV 139
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 128 SMSSTPSADKTSLRE 172
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 6.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 166 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 294
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 166 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 288
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 6.1
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 243 WLSLQVDGLAGSLGF 199
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 63 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP 164
R + +Q + K+YTE H + ++ +TRLP
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 8.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 31 GRVYNVTAHALGVIVN 78
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 8.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 97 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 219
I+ K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,177
Number of Sequences: 5004
Number of extensions: 29619
Number of successful extensions: 113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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